Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31033
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16265.1 68417.m02467 DNA-directed RNA polymerase II, putativ...    30   1.5  
At3g16980.1 68416.m02169 DNA-directed RNA polymerase II, putativ...    29   3.5  

>At4g16265.1 68417.m02467 DNA-directed RNA polymerase II, putative
           similar to SP|P36958 DNA-directed RNA polymerase II 15.1
           kDa polypeptide (EC 2.7.7.6) {Drosophila melanogaster};
           contains Pfam profile PF02150: RNA polymerases M/15 Kd
           subunit
          Length = 114

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 252 LFRVMCSPNKTHRWRE 299
           LF V C+PN +HRWRE
Sbjct: 99  LFFVCCNPNCSHRWRE 114


>At3g16980.1 68416.m02169 DNA-directed RNA polymerase II, putative
           similar to SP|P36958 DNA-directed RNA polymerase II 15.1
           kDa polypeptide (EC 2.7.7.6) {Drosophila melanogaster};
           contains Pfam profile PF02150: RNA polymerases M/15 Kd
           subunit
          Length = 114

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 252 LFRVMCSPNKTHRWRE 299
           LF V C+PN  HRWRE
Sbjct: 99  LFFVCCNPNCGHRWRE 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,306
Number of Sequences: 28952
Number of extensions: 267962
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)