Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31031
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   1.3  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    24   6.9  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    24   6.9  

>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 44  LLTKFDVFYKSERIQTNIICDKDYINILPKR-YCV 145
           + +K+ + YK+ RI T I    D +++LP R YC+
Sbjct: 61  IFSKYYLHYKTFRILTIIQSWSDKVSVLPNRLYCL 95


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 11  SVIKYIAYFLYLLTKFDVFYKSERIQTN 94
           SVI  ++ FL++   +D F  +  ++TN
Sbjct: 464 SVISILSLFLFMYVMYDQFTSNRVVKTN 491


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 124 YINIIFVTYYVCLYSLTFVKYVKL 53
           YI  +F+ + +    LTFV+Y KL
Sbjct: 6   YICCLFLKFILANVDLTFVEYAKL 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,431
Number of Sequences: 5004
Number of extensions: 28169
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)