Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31031
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,400...    27   6.5  
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297...    27   6.5  
10_08_0909 - 21487512-21487564,21487938-21488292,21489433-214894...    26   8.6  
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13...    26   8.6  

>07_01_0542 +
           4002542-4003119,4004347-4004404,4004518-4004835,
           4005201-4005446,4005550-4005648,4005912-4006097,
           4006204-4006401,4006521-4006596,4006721-4007637
          Length = 891

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 322 LIFAIVLSNRQVIYYRVNIIWPICVIFFLYHC 227
           ++FA +  +R+  Y+ V  +  +CV  F  HC
Sbjct: 189 ILFARLEKDRKFSYFWVRCVKLVCVTLFAVHC 220


>01_04_0018 +
           15128174-15128316,15128445-15128544,15129573-15129758,
           15129877-15129924,15130006-15130209,15130476-15130565,
           15130667-15130747,15130827-15130889,15131794-15131832,
           15131914-15132000,15132103-15132252,15132331-15132386,
           15132493-15132775,15132989-15133132,15133233-15133451,
           15133528-15133695,15133868-15133969
          Length = 720

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 20  KYIAYFLYLLTKFDVFYKSERIQTNIICDKDYI 118
           KY+AY         VF+K+ +    +IC+KD +
Sbjct: 330 KYMAYVTNCFQSNSVFHKALKEAFEVICNKDVV 362


>10_08_0909 -
           21487512-21487564,21487938-21488292,21489433-21489488,
           21491640-21491778,21493519-21493674,21493983-21494171,
           21494403-21494444,21494445-21494699
          Length = 414

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 278 SCQYHMAY-LCNFFFIPLLF 222
           +CQY   + +CNF F+PLLF
Sbjct: 77  ACQYWGFFQVCNFKFLPLLF 96


>03_01_0016 +
           131141-131236,131743-132043,132125-132341,132440-132773,
           132883-132996,133065-133193,133293-133469,133555-133746,
           134844-134981,135327-135559,135900-136003,136633-136727,
           136817-137053,137801-137922,138252-138354,138750-138826,
           138909-139017,139107-139253,139953-140000,140292-140492,
           140589-140738,140917-141002,141088-141193,141278-141373,
           141759-141911,142647-142819,142923-142986,144056-144193,
           144548-144595,144690-144836,144907-144968,146540-146645,
           147357-147461,147548-147679,147765-147974,148070-148171,
           148261-148398
          Length = 1729

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 110 LCHILCLFVFSHFCKI 63
           +CH+LC+ +F H  K+
Sbjct: 846 VCHLLCMLLFFHILKV 861


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,589,472
Number of Sequences: 37544
Number of extensions: 139691
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)