Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31031
         (378 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24207| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  27   5.1  
SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   8.8  
SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10)                 26   8.8  

>SB_24207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 316 FAIVLSNRQVIYYRVNIIWPICVIFFLYHCYFQNM 212
           F  V     ++Y+  NI  PICVI F Y+  F+++
Sbjct: 178 FQTVELKPSMLYFYANISIPICVITFSYYRIFKSV 212


>SB_14844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 59  DVFYKSERIQTNIICDKDYINILPKRYCV 145
           ++F  ++    N  C   Y   LPKRYC+
Sbjct: 83  ELFTSNDDRPDNHCCSNSYCLFLPKRYCI 111


>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = -3

Query: 358 CLSSLHGNKKDXLIFAIVLSNRQVIYYRVNIIWPICVI 245
           C  +  GN  +    + + S  ++ YY++ +IW + ++
Sbjct: 709 CCLATRGNSNESTTLSELASEERLFYYQLALIWQVILV 746


>SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 350

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -1

Query: 99 IMFVCILSLL*NTSNFVNRYRKYAMYLI 16
          ++ +C++S+L N S F+  Y+K A++ +
Sbjct: 14 VVCICVISILGNGSLFIIVYKKSALHTV 41


>SB_11711| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-10)
          Length = 948

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 301 SNRQ--VIYYRVNIIWPICVIFFLYHCYFQNM 212
           SN Q   ++  VN+  P+CVI F Y+  F  +
Sbjct: 455 SNHQPSTLFAYVNVFIPMCVIIFCYYKIFNTI 486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,717,085
Number of Sequences: 59808
Number of extensions: 178776
Number of successful extensions: 281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)