Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31025
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.14
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 31 0.14
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 30 0.32
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.73
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 28 1.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.2
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 3.0
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.9
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 3.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 5.2
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 6.8
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 31.5 bits (68), Expect = 0.14
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 526 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFND 705
+++ YN+ M TS+C+C++ + YGGN A E F E F +Y + ++
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEEFSFHFRGPIELK-RFAVYYPDTSN 104
Query: 706 ALGA 717
AL +
Sbjct: 105 ALSS 108
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 70 AGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLE 189
A +V+ S +P + DLE + ++LTGD SAV+ LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 30.3 bits (65), Expect = 0.32
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 55 VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIV 219
V+ A+AG+ + S+ N+D+ K+ L G Y +A ++ QG+GS++
Sbjct: 91 VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 29.1 bits (62), Expect = 0.73
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 189 FQALTYSTVVVTGEDAVVQFVLEVLV 112
F +T V+V EDAVV+FVL +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.7
Identities = 8/38 (21%), Positives = 22/38 (57%)
Frame = +1
Query: 211 SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYF 324
+I+ V+N I+D+ + ++C ++W G ++ ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +2
Query: 74 ASWNYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTR 253
AS + T A T +S ++ ++S+P+T++ A + A + +A + + S T
Sbjct: 228 ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTP 287
Query: 254 DGTPWSTATS 283
TP S+A S
Sbjct: 288 SSTPLSSANS 297
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.2
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Frame = +2
Query: 59 SPPAPASWNYPRTA*ALLTKTSRTNCTTASS---------PVTTTVLYVRAWNTRAKARA 211
+PP PAS + T+ + L TS T+CTT++S PVT TV +T
Sbjct: 315 TPPPPASTSSTGTSSSPLPSTS-TSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPP 373
Query: 212 ASFKM*LTI*SLTRDGTPWSTATSCGSAT 298
AS T + T ST+TSC ++T
Sbjct: 374 AS-----TSSTGTSSSPLLSTSTSCTTST 397
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 59 SPPAPASWNYPRTA*ALLTKTSRTNCTTASS 151
+PP PAS + T+ + L TS T+CTT++S
Sbjct: 369 TPPPPASTSSTGTSSSPLLSTS-TSCTTSTS 398
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = +1
Query: 82 ELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRN 261
E+ S N LE D D R ++ + Q +++++ NL I N
Sbjct: 404 EMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFN 462
Query: 262 TMEYCYKLWVGNGQDIVK 315
+EY LW NG I K
Sbjct: 463 ILEYLRHLWSNNGDAIAK 480
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 586 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 690
R R+V G ++A + + W F +Y ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 523 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 618
+HN +N + + S ++ + +R+ V+ GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +1
Query: 82 ELSADSMSPSNQDLEDKLYNSILTGDYDS------AVRKSLEYESQGQGSIVQNVVNNL 240
ELS +S++ N D+ +++ I + D A+ K +E+ES+G + + N L
Sbjct: 32 ELSGESLARFNNDINRRIFELIHSHDSHERFGGILAIGKLIEFESEGDVTNLSRYANYL 90
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -2
Query: 327 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 223
W+VLF + L+ ++ P V LHGV + VN + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,292
Number of Sequences: 5004
Number of extensions: 56734
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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