Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31025
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    31   0.90 
U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian ...    29   3.6  
Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine re...    28   6.4  
AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 119 TSRTNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSAT 298
           TS T  TTA+S   +T     +  T +   + +     +  S T + T  ST  S  ++T
Sbjct: 187 TSSTTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTST 246

Query: 299 DRILSKSTS 325
           D   ++STS
Sbjct: 247 DSTTTESTS 255


>U80032-3|AAM15556.1|  404|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 1 protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +2

Query: 29  NFSLCSQCACSPPAPASWNYPRTA*ALLTKTS-RTNCTTASSPVTTTVLYVRAWNTRAKA 205
           NF L   C  +P      N+   A A+ + TS  TN T+++S  T+  L    + T A  
Sbjct: 8   NFML--DCGMAPHMMPPINWAAAAIAVASSTSGATNATSSNSVATSQQLQHHPYGTAAGG 65

Query: 206 RAASFKM*LTI*SLTRDGTPWSTATSCGSATDRI 307
              + +      ++ +  TP+S AT+C  +++ I
Sbjct: 66  YKHAQQ------AIPKSVTPYSDATNCKKSSNHI 93


>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
 Frame = +1

Query: 307 IVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKH 462
           I    FP+++  I + NY+     +YN+ LK     T+  N+ +   DG       + K+
Sbjct: 312 ITSPNFPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKY 371

Query: 463 TDLVSWKFITLWENNR--VYFKAHNT 534
           +    W F  +   N   V F++++T
Sbjct: 372 SGYYEWPFFNVSTGNSMLVTFRSNST 397


>AF099920-4|AAK29844.2|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein95 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 56  CSPPAPASWNYPRTA*ALLTKTSRTNCTTASSPVTTTVLYVRAWNTRAKARAASF 220
           C PPAP S+ Y      ++    R   T  S  + T  L V  ++TR   R  +F
Sbjct: 107 CEPPAPLSFFYMYWINVVINDLFRRTSTWLSVVMATIRLIVLKFSTRRAFRKVNF 161


>AL032665-1|CAA21771.1|  294|Caenorhabditis elegans Hypothetical
           protein Y76A2A.1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -3

Query: 152 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILL 18
           V++LL ++S R     L  SA S+ T   A S HIA  ++  ILL
Sbjct: 118 VQLLLCNISDRDIFVKLRCSAASNITALPAGSGHIAPKSQMRILL 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,189,681
Number of Sequences: 27780
Number of extensions: 337515
Number of successful extensions: 1135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)