Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31025
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    35   0.069
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    30   1.5  
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   2.0  
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    29   2.6  
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    29   2.6  
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR...    29   2.6  
At1g49920.1 68414.m05598 zinc finger protein-related weak simila...    29   2.6  
At5g66720.2 68418.m08411 5-azacytidine resistance protein -relat...    28   6.0  
At5g66720.1 68418.m08410 5-azacytidine resistance protein -relat...    28   6.0  
At2g35270.1 68415.m04326 DNA-binding protein-related contains Pf...    28   6.0  
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    28   7.9  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 238 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 336
           +++D +    EY  KL + +G D   KYFPL+F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 238 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 336
           +++D +    +Y  KL + +G D   K+FPL+F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 55  VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYD 165
           VLA + G  ELS    SP+ Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSP---SPAEQEIESFLYNAINMGFFD 103


>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 100 MSPSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRR 258
           M   NQ  E +KL+  NS L+  Y  ++  S ++E+Q +  + QNV    ++DK R
Sbjct: 288 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 100 MSPSNQDLE-DKLY--NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRR 258
           M   NQ  E +KL+  NS L+  Y  ++  S ++E+Q +  + QNV    ++DK R
Sbjct: 289 MEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1103

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -3

Query: 134  SLSSRSWLEGLMLSADSSTTPALAASTHIAN 42
            S+S   WLEG  L  DS  T    A  HIAN
Sbjct: 1065 SVSFNPWLEGEALCVDSMITEQQDAQIHIAN 1095


>At1g49920.1 68414.m05598 zinc finger protein-related weak
           similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
           mays] GI:1857256; contains Pfam profiles PF03108: MuDR
           family transposase, PF04434: SWIM zinc finger
          Length = 785

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +1

Query: 109 SNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKLW 288
           SN  L D  Y+S LT D + A  + L +         Q+    +++D +    +Y  KL 
Sbjct: 340 SNGLLVDWQYDS-LTHDPEHASFRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLM 398

Query: 289 VGNGQDIVKKYFPLSF 336
           + +  D   +YFPL+F
Sbjct: 399 IASAFDATNQYFPLAF 414


>At5g66720.2 68418.m08411 5-azacytidine resistance protein -related
           contains weak similarity to 5-azacytidine resistance
           protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
           pombe]
          Length = 411

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 88  SADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNT 264
           S D +      + D LYN  +TG   S+VR  L  + +G    +  +     +DK+R +
Sbjct: 324 SGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGL--DPKGTAQKIAELARQRAVDKKRQS 380


>At5g66720.1 68418.m08410 5-azacytidine resistance protein -related
           contains weak similarity to 5-azacytidine resistance
           protein azr1 (Swiss-Prot:Q09189) [Schizosaccharomyces
           pombe]
          Length = 414

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 88  SADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNT 264
           S D +      + D LYN  +TG   S+VR  L  + +G    +  +     +DK+R +
Sbjct: 327 SGDVIVAGTDGVYDNLYNEEITGVVVSSVRAGL--DPKGTAQKIAELARQRAVDKKRQS 383


>At2g35270.1 68415.m04326 DNA-binding protein-related contains
          Pfam domain PF03479: Domain of unknown function
          (DUF296), found in AT-hook motifs Pfam:PF02178
          Length = 285

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -2

Query: 78 DAGAGGEHAHCEHNEKFH 25
          D GAGG H H  HN   H
Sbjct: 33 DGGAGGNHHHHHHNHNHH 50


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 79  VELSADSMSPSN---QDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIID 249
           ++L+ D+ S  N   Q    K+Y  +L  +   AV++  ++ES G  +  Q  V  + + 
Sbjct: 283 LQLATDNFSEKNVLGQGGFGKVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVA 342

Query: 250 KRRNTM 267
             RN +
Sbjct: 343 VHRNLL 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,914
Number of Sequences: 28952
Number of extensions: 304446
Number of successful extensions: 913
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)