Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31024
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = -3

Query: 711 CLNLFF----FYLLISPACPSTSQAFSL 640
           C+N+      F+LLIS   PSTS A  L
Sbjct: 270 CINILLSQTMFFLLISEIIPSTSLALPL 297


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +1

Query: 325 VNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWN 432
           + +  +  P   LL GF ++T + +  ++  N  WN
Sbjct: 13  IGVLLMLAPINALLLGFVQSTPDNNKTVREFNVYWN 48


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +2

Query: 476 PSQRPQRQIRQAHTKEGF---QIRKQIRQAPEEGRRIQLP*PIEGREKEGIHLGRGRQ 640
           P   P++Q +QA   +G     + +Q + AP+      LP P+    +      RGRQ
Sbjct: 219 PGMHPRQQ-QQAQQHQGVVTSPLSQQQQAAPQGAASANLPSPLYPWMRSQFERKRGRQ 275


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 568 AFFWSLANL--FSYLETFFSVGLTNLPLRSLTWEFRSE 461
           +F + +A L  F+ +  F  VG   +PL    WE  +E
Sbjct: 314 SFGYCIATLLEFAGVHYFTKVGSGEIPLEEEEWENENE 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,578
Number of Sequences: 438
Number of extensions: 2608
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)