Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31023
         (343 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...   159   1e-38
UniRef50_UPI0000EBCA66 Cluster: PREDICTED: hypothetical protein;...    32   2.9  
UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA...    32   2.9  
UniRef50_UPI0000D56366 Cluster: PREDICTED: similar to CG30042-PA...    31   5.0  
UniRef50_Q17G24 Cluster: Putative uncharacterized protein; n=2; ...    31   6.7  

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score =  159 bits (385), Expect = 1e-38
 Identities = 78/107 (72%), Positives = 78/107 (72%)
 Frame = +1

Query: 22  MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR 201
           MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR
Sbjct: 1   MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR 60

Query: 202 YIPDNSGAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDLSKYL 342
           YIPDNSGAYN                             KEDLSKYL
Sbjct: 61  YIPDNSGAYNGDRGDRGAAGGFYTGSGTAGGPGGAYVGTKEDLSKYL 107


>UniRef50_UPI0000EBCA66 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 255

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -1

Query: 199 GQSCRGWGHNGLDQLHSG-LAYRRMEKQ*SKLGCTGKECTFQFRRPAPLSETGR 41
           G +   WG   +D    G +A+RR  K+ S  GC G E    FR      E GR
Sbjct: 144 GAAAASWGRINIDSAPGGRVAWRRPPKRLSANGCHGNEAPSVFRWAEGGREAGR 197


>UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG30042-PA - Tribolium castaneum
          Length = 275

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +1

Query: 190 NSGRYIPDNSGAYN 231
           N GRY PDNSGAYN
Sbjct: 25  NDGRYYPDNSGAYN 38



 Score = 31.5 bits (68), Expect = 3.8
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 40  ICLSLTVALA-AETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDN 216
           I +S  VAL  A+T +       R Y   S   Y  G    D G Y P  D+SG Y PD+
Sbjct: 5   IVISAFVALTLAQTPRQIDINDGRYYPDNSG-AYNGG----DDGSYHP--DDSGAYRPDD 57

Query: 217 SGAY 228
           SGAY
Sbjct: 58  SGAY 61


>UniRef50_UPI0000D56366 Cluster: PREDICTED: similar to CG30042-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG30042-PA - Tribolium castaneum
          Length = 210

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 145 GRYVAD-PGRYDPSRDNSGRYIPDNSGAY 228
           GRYV D  G+Y P+  + G+YIPD SG Y
Sbjct: 19  GRYVPDNSGQYVPT--DEGQYIPDYSGRY 45


>UniRef50_Q17G24 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 279

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = +1

Query: 136 YKPGRYVAD--PGRYDPSR---DNSGRYIPDNSGAYN 231
           Y  GRY  D   G+Y+  +   D SG Y PD+SG Y+
Sbjct: 24  YNDGRYYPDLYQGKYNDGKYRPDGSGAYRPDDSGRYS 60


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,250,950
Number of Sequences: 1657284
Number of extensions: 3940191
Number of successful extensions: 12879
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12868
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10275329640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)