Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31023
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868... 27 3.9
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104... 27 3.9
04_04_1054 + 30437468-30437763,30438647-30438779,30439099-304391... 26 6.7
03_05_0501 - 24944533-24945507 26 6.7
07_01_0878 + 7288950-7289231 26 8.9
05_04_0182 - 18814642-18815175,18815180-18815195,18815468-188155... 26 8.9
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 26 8.9
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 26 8.9
>10_08_0518 +
18486315-18486462,18486495-18486712,18486763-18486808,
18487436-18487709,18487797-18488052
Length = 313
Score = 27.1 bits (57), Expect = 3.9
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 34 LAICLSLTVALAAETGKYTPFQYNRVYS---TVSPFVYK-PGRYVADPGRYDPSR 186
LAI +L V + Y+ Q ++YS TV V + PGR AD G+YD R
Sbjct: 112 LAILDALAVPKVSSFESYSCMQTVKLYSLIVTVEELVLQQPGRAEADFGKYDIRR 166
>03_05_1143 +
30709825-30709926,30710105-30710260,30710356-30710439,
30710769-30710882,30711019-30711111,30711888-30711977,
30712157-30712227,30712300-30712374,30712481-30712568,
30712748-30712806,30712893-30712956,30713030-30713095,
30713283-30713435,30713522-30713626,30713739-30713974,
30714104-30714173,30714286-30714339,30714501-30714557,
30714662-30714741,30716056-30717919
Length = 1226
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -2
Query: 129 WRNSRVNSVVLERSVLS---SFGGQRHCQRQADCQKDT 25
W+++ V V+ R + S S GQ+ C RQ CQ T
Sbjct: 28 WKDNNVQVVIRVRPLSSGEISVQGQKRCVRQDSCQSIT 65
>04_04_1054 +
30437468-30437763,30438647-30438779,30439099-30439159,
30439370-30439483,30439813-30439971,30440124-30440206,
30440423-30440549,30440872-30440951,30441027-30441113,
30441316-30441440,30441543-30441603,30441806-30441859,
30441946-30442023,30442449-30442554,30442655-30442803,
30442945-30443052
Length = 606
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = +3
Query: 9 ITTXNACLFGNLPV----SDSGAGRRNWKVH 89
++T CL G+ PV SG+G NW VH
Sbjct: 250 VSTGAVCLDGSPPVYHFSPGSGSGANNWLVH 280
>03_05_0501 - 24944533-24945507
Length = 324
Score = 26.2 bits (55), Expect = 6.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -1
Query: 214 CRECNGQSCRGWGHNGLDQ--LHSGLAYRRMEKQ*SKLGCTGKECTFQFRRPAPLSET 47
CR Q G G G D+ + +A R+ +K LG E +RRP P + T
Sbjct: 44 CRSQEEQPDGGGGGGGDDKENVSPEVAPRKAKKMRVSLGAAEDEAAAYYRRPDPATAT 101
>07_01_0878 + 7288950-7289231
Length = 93
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 83 FPVSAASATVRDRQIAKKTRIXRCYEA 3
FPVSA + V R++A R+ RC A
Sbjct: 52 FPVSAQAQMVVQRELAAVGRLSRCRSA 78
>05_04_0182 -
18814642-18815175,18815180-18815195,18815468-18815557,
18815838-18815902
Length = 234
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 171 TAWISYIAAWLIDEWRNSRVNSVVLE-RSVLSS 76
T W Y A WL W SV LE RS +SS
Sbjct: 25 TLWDVYPALWLTGAWVGGAQVSVTLEPRSQISS 57
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 202 NGQSCRGWGHNGLDQLHSGLAYRR 131
N + +GW GL+QL SGL ++
Sbjct: 305 NNLTLKGWPLTGLEQLRSGLLQQK 328
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 202 NGQSCRGWGHNGLDQLHSGLAYRR 131
N + +GW GLDQL SG ++
Sbjct: 303 NNLTLKGWPLTGLDQLRSGFLQQK 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,132,349
Number of Sequences: 37544
Number of extensions: 111214
Number of successful extensions: 358
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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