Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31023
         (343 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   0.32 
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 29   0.99 
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)                    27   4.0  
SB_40389| Best HMM Match : DUF590 (HMM E-Value=0)                      26   9.2  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           26   9.2  
SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)                      26   9.2  

>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 100 YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 210
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 1   FAS*QRXMRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 144
           ++S +    VFL   +S+TV + +  GKY P  YN   + ++ F + P
Sbjct: 123 YSSRRYLFSVFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168


>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
          Length = 438

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 132 EWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 22
           E+R+ R NS V    +L+   G+R C+R     + T+
Sbjct: 231 EFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTN 267


>SB_40389| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 320

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 94  FQYNRVYSTVSPFVYKPGRYVADPGRY 174
           FQ+   YS++    +  G++V  PG Y
Sbjct: 81  FQFTNFYSSIFYIAFFKGKFVGYPGNY 107


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 103 NRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRYIPDNS 219
           N++Y  V  F Y  G ++      D + +N G  +PD S
Sbjct: 434 NQMYEGVEEFQYDDGVWLEKQIEEDENAENGGLMLPDVS 472


>SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 982

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 94  FQYNRVYSTVSPFVYKPGRYVADPGRY 174
           FQ+   YS++    +  G++V  PG Y
Sbjct: 19  FQFTNFYSSIFYIAFFKGKFVGYPGNY 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,125,238
Number of Sequences: 59808
Number of extensions: 130337
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)