Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31023
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    28   2.0  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    28   2.0  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   2.7  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   2.7  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   2.7  
Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical pr...    26   6.1  
AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical ...    26   6.1  
AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormo...    26   6.1  

>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 150 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 22
           +AW  D    + +N +  E + LS+   Q+HC+    CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 150 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 22
           +AW  D    + +N +  E + LS+   Q+HC+    CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 66  GRRNWKVHSFPVQPSLLY 119
           GR++WK H F ++PS LY
Sbjct: 340 GRKSWKKHYFVLRPSGLY 357


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 66  GRRNWKVHSFPVQPSLLY 119
           GR++WK H F ++PS LY
Sbjct: 357 GRKSWKKHYFVLRPSGLY 374


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 66  GRRNWKVHSFPVQPSLLY 119
           GR++WK H F ++PS LY
Sbjct: 469 GRKSWKKHYFVLRPSGLY 486


>Z75955-2|CAB00112.1|  355|Caenorhabditis elegans Hypothetical
           protein R07B7.3 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 91  PFQYNRVYSTVSPFVYKPGRYVAD 162
           P Q N V   V P  Y+P +YV D
Sbjct: 319 PVQRNNVVRQVQPVQYRPVQYVTD 342


>AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical
           protein F29C4.7c protein.
          Length = 497

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 64  LAAETGKYTPFQYNRV-YSTVSPFVYKPGRYV-ADPGRYDPSRDNSGRYIPD 213
           L  E  KY PF+   V Y+ +       G+ V  DP      RD  G+YIPD
Sbjct: 54  LTQELKKYAPFEIKVVRYTLMDRLKSVLGKRVQCDPAGI--LRDQEGKYIPD 103


>AF016438-9|AAB65891.2|  394|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 103 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 171 TAWISYIAAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKD 28
           T W+S+I    + E  N RVN+  L+ S+L    G   C    D + D
Sbjct: 213 TCWVSWIRLDKLSETANKRVNA-TLDNSLL--MVGNDSCMHMNDYEVD 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,815,595
Number of Sequences: 27780
Number of extensions: 91237
Number of successful extensions: 370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)