Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31021
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 44 8e-05
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 44 8e-05
Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical pr... 32 0.44
AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical ... 32 0.44
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 31 0.77
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 31 0.77
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical ... 30 1.3
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical p... 29 2.4
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 29 2.4
AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical ... 29 2.4
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical ... 29 3.1
AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical ... 29 3.1
Z83108-6|CAB05512.1| 833|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50070-13|CAA90402.1| 833|Caenorhabditis elegans Hypothetical p... 29 4.1
U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 4.1
Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 5.4
AL117195-7|CAB55028.1| 158|Caenorhabditis elegans Hypothetical ... 28 5.4
AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha ... 28 5.4
AC024753-9|AAF60460.1| 139|Caenorhabditis elegans Hypothetical ... 28 5.4
U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical pr... 28 7.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 7.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 7.2
Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical pr... 27 9.5
U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical pr... 27 9.5
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 27 9.5
AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical ... 27 9.5
AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical ... 27 9.5
AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short i... 27 9.5
AB011382-1|BAA24982.1| 357|Caenorhabditis elegans RecA/Rad51/Dm... 27 9.5
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 44.4 bits (100), Expect = 8e-05
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Frame = +1
Query: 196 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 375
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 376 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 555
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 556 ENFGLSN-------AQLERNKTKEQLEEEKKISLS 639
E+ G+ + A+ E TKEQ EE K ++++
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMA 199
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 44.4 bits (100), Expect = 8e-05
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Frame = +1
Query: 196 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 375
EG+ + + + +D +L++Y R +R QA+RK++
Sbjct: 46 EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105
Query: 376 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 555
EEK+++ EE KK Q M+ + G NF IQKK
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164
Query: 556 ENFGLSN-------AQLERNKTKEQLEEEKKISLS 639
E+ G+ + A+ E TKEQ EE K ++++
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQEEAKSVAMA 199
>Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical
protein T05D4.5 protein.
Length = 482
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER-NKTKEQLE 615
D EEK+++ E +KK+ A + KDA +K ++ G + + K K+ E
Sbjct: 411 DAEEKKKKDAEEKKKKDAEDEKKKDAGDEKKKDAEDEKKKDAGDEKKKKDAGEKKKKDAE 470
Query: 616 EEKKIS 633
E+KK++
Sbjct: 471 EKKKVA 476
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 618
D EEK+++ E EKK+ A + KDA +K + + + + K+ EE
Sbjct: 419 DAEEKKKKDAEDEKKKDAGDEKKKDAEDEKKKDAGDEKKKKDAGEKKKKDAEEKKKVAEE 478
Query: 619 EKK 627
EKK
Sbjct: 479 EKK 481
>AC084161-2|AAK29732.3| 782|Caenorhabditis elegans Hypothetical
protein Y92H12A.4 protein.
Length = 782
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 442 IEEKRQRLEEAEKKRQAMLQAMKDASKTG-PNFTIQKKSENFGLSNAQLERNKTKEQLEE 618
I K++ +E + + + A+ + T P+F+ +K S + + ++E+ K K+ +EE
Sbjct: 497 IRPKKKSTDEEKAIKSSSEPALSEQKSTEKPSFSTEKLSSD--SATTKIEKEKLKKAIEE 554
Query: 619 EKKISLSIRIKPL 657
+++ L++ IK L
Sbjct: 555 QEEQELNVLIKQL 567
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 442 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 621
+E+K++ +EE EKKR + + A IQ K + Q R++ KE L++
Sbjct: 869 LEDKQKIVEELEKKRDEL--GEEAAKVKARQAEIQSKLDGIFKELVQCHRDEAKESLQKR 926
Query: 622 KKISLSI 642
+K+ I
Sbjct: 927 QKLEKDI 933
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 31.1 bits (67), Expect = 0.77
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 442 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLE- 615
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 648 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 702
Query: 616 EEKKISLSIRIKPLTIEGLSVD 681
+ +K+S I K +E L +
Sbjct: 703 QVEKVSNEISEKQQEVENLMAE 724
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 31.1 bits (67), Expect = 0.77
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 442 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLE- 615
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 650 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 704
Query: 616 EEKKISLSIRIKPLTIEGLSVD 681
+ +K+S I K +E L +
Sbjct: 705 QVEKVSNEISEKQQEVENLMAE 726
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 31.1 bits (67), Expect = 0.77
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 442 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQ-KKSENFGLSNAQLERNKTKEQLE- 615
IE+ Q+LEEAEK+ + + +AS + + T+ K+SE L E N E+L+
Sbjct: 650 IEDAVQKLEEAEKRAREL-----EASVSSRDTTVSTKESELSELKGKLTESNSFIEELKV 704
Query: 616 EEKKISLSIRIKPLTIEGLSVD 681
+ +K+S I K +E L +
Sbjct: 705 QVEKVSNEISEKQQEVENLMAE 726
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +1
Query: 445 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
EE+ R++E E+K++ +L+ ++A K + K+E E K K++LEEE+
Sbjct: 531 EEEEARIKEEEEKQRKILE--EEARKKQEEEEARLKAEE---ELKIYEEEKRKKELEEER 585
Query: 625 KISLSIRIK 651
K + IK
Sbjct: 586 KKKEELEIK 594
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 451 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKK 627
K+Q EEA K + L+ ++ + +KK E + + E K K+ LEEEKK
Sbjct: 554 KKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIKR-KAEEEKKKKALEEEKK 611
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 445 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
E++R+ LEE +K+Q +A A + + +K+ + + E + K + EEEK
Sbjct: 542 EKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIKRKAEEEK 601
Query: 625 K 627
K
Sbjct: 602 K 602
>AL021175-9|CAA15969.2| 444|Caenorhabditis elegans Hypothetical
protein Y6E2A.8 protein.
Length = 444
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Frame = +1
Query: 451 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS---ENFGLSNAQLERNKT--KEQLE 615
KR+ ++ AEK ++A L+ K++SK+ +KK ++ ++A+ K+ KEQ +
Sbjct: 323 KRETMKRAEKMKEAELKKKKESSKSKEEDKNKKKEVKIKSAPKTSAKKSAKKSAKKEQKK 382
Query: 616 EEKKI 630
EKK+
Sbjct: 383 SEKKV 387
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +1
Query: 448 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKK 627
E+R++LEE+E RQA L +++ E L +LE K + + +++
Sbjct: 337 ERRRKLEESETARQAELDRQATIYAEQERMAMERNRE---LERIRLEEKKRENERVRQEE 393
Query: 628 ISLSIRIKPLTIEGLSVDK 684
I++ I K +E L +++
Sbjct: 394 IAMEIS-KIRELERLQLER 411
>Z75531-10|CAJ85759.1| 500|Caenorhabditis elegans Hypothetical
protein C54D10.12 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +1
Query: 445 EEKRQRLEEAEKKRQAMLQAMKDAS------KTGPNFTIQKKSENFGLSNAQLERNKTKE 606
EEK Q++ E E+K Q +L K+ + + + I++K E N Q R K E
Sbjct: 208 EEKLQQIREKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQQARQKDNE 267
Query: 607 Q 609
Q
Sbjct: 268 Q 268
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/62 (20%), Positives = 36/62 (58%)
Frame = +1
Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 618
D+E +++LEE+E ++ +LQ+ K + + +++ ++ +++ + K + Q+ E
Sbjct: 1397 DVEHLQKQLEESEVAKERILQSKKKIQQELEDSSMELENVRASHRDSEKRQKKFESQMAE 1456
Query: 619 EK 624
E+
Sbjct: 1457 ER 1458
>AF039713-6|AAB96723.1| 829|Caenorhabditis elegans Hypothetical
protein F57B10.6 protein.
Length = 829
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = +1
Query: 451 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENF------GLSNAQLERNKTKEQL 612
KRQ LE +KRQ +K++ K G + KKS+ GL + L N KE +
Sbjct: 81 KRQVLEARRQKRQNDDDILKNSKKMG-KLKVLKKSQKIREIASGGLDDVAL-ANAIKEVI 138
Query: 613 EEEKKISLSIRIKPLTIEGLSVDK 684
KK+ L+ K + +DK
Sbjct: 139 SPSKKVILNDIYKDIPSTSTYLDK 162
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +1
Query: 442 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 621
+E+ +L + +Q +++ +T T +++S + +SN QLE + +E LEEE
Sbjct: 1301 LEDAEAQLCALNRIKQQQHSQLEELKRTLDQETRERQSLHSQVSNYQLECEQFRESLEEE 1360
Query: 622 KKISLSIR 645
+ ++
Sbjct: 1361 QDAKTDVQ 1368
>AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical
protein C35E7.9 protein.
Length = 301
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 445 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
E+K ++ E+ ++K + KD K+G +K+ + + + K +E+ E+EK
Sbjct: 121 EKKEEKKEDEKEKGDDKKEDEKDDKKSGSKDAEKKEEKKEEEKKEEKKEEKKEEKKEDEK 180
Query: 625 K 627
K
Sbjct: 181 K 181
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +1
Query: 445 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
EEK+++ +++EKK +A K+ K +K+ + + + E K +++ +E++
Sbjct: 73 EEKKEKSKKSEKKDDKKEEAKKEDDKKDEKKDEKKEDKKDDKKDDKKEEKKEEKKEDEKE 132
Query: 625 K 627
K
Sbjct: 133 K 133
>AF025458-4|AAB70975.4| 374|Caenorhabditis elegans Hypothetical
protein C01B12.2 protein.
Length = 374
Score = 29.1 bits (62), Expect = 3.1
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Frame = +1
Query: 448 EKRQRLEEAEKKRQAMLQAMKDASKTGP----NFTIQKKSENFGLSNAQLERNKTKEQLE 615
E ++R EEAE+K Q A+K +T N TIQ K+ L +E + L
Sbjct: 220 ENQKRQEEAERKLQEKQNAIKCLMETDSVTFWNQTIQSKTSTVVLDRISMELGSLAQNLI 279
Query: 616 EEKKISLSIR--IKPLTIEGLS 675
+ + S I+ L + GLS
Sbjct: 280 SGRDFAASSSKIIQVLQVLGLS 301
>Z83108-6|CAB05512.1| 833|Caenorhabditis elegans Hypothetical
protein F43G6.9 protein.
Length = 833
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +1
Query: 448 EKRQRLEEAEKKRQAMLQAMKDASKTG-PNFTIQKKSENFGLSNAQLER--NKTKEQLEE 618
E+++R++ E K+ + K A+ G P+ + + AQ+E N+TK+ +E
Sbjct: 536 ERQERIDRGEDKKLRQTLSDKFATSLGLPSKSSTHNPRHVLDMKAQVESVDNQTKKLSDE 595
Query: 619 EKKISLSIRIKPLTI 663
E+KI+++ +++ + +
Sbjct: 596 ERKIAVAKKLRTMLL 610
>Z50070-13|CAA90402.1| 833|Caenorhabditis elegans Hypothetical
protein F43G6.9 protein.
Length = 833
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Frame = +1
Query: 448 EKRQRLEEAEKKRQAMLQAMKDASKTG-PNFTIQKKSENFGLSNAQLER--NKTKEQLEE 618
E+++R++ E K+ + K A+ G P+ + + AQ+E N+TK+ +E
Sbjct: 536 ERQERIDRGEDKKLRQTLSDKFATSLGLPSKSSTHNPRHVLDMKAQVESVDNQTKKLSDE 595
Query: 619 EKKISLSIRIKPLTI 663
E+KI+++ +++ + +
Sbjct: 596 ERKIAVAKKLRTMLL 610
>U80441-1|AAB37651.1| 647|Caenorhabditis elegans Hypothetical
protein F27C1.6 protein.
Length = 647
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 439 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER 591
D E+ ++ ++E EK + L S GP T +K+ +NF + + R
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNFVIKAKEKRR 564
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/54 (22%), Positives = 31/54 (57%)
Frame = +1
Query: 445 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 606
+EK+Q+L+E EK+R+ + Q ++ ++ +E+ +++ ++ K +E
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPRE 269
>Z50794-5|CAA90660.1| 1139|Caenorhabditis elegans Hypothetical
protein F59F5.6 protein.
Length = 1139
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 448 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFT--IQKKSENFGLSNAQLERNKTKEQLEEE 621
+K + L E + Q ++A+ A + + IQ+ N +A+LER +E++ EE
Sbjct: 373 KKAESLPSVEAELQQRMEALTAAEQKSVSAEERIQRLDRNIQELSAELERAVQRERMNEE 432
Query: 622 KKISLSIRIKPLTIE 666
LS + L E
Sbjct: 433 HSQRLSSTVDKLLSE 447
>AL117195-7|CAB55028.1| 158|Caenorhabditis elegans Hypothetical
protein Y57A10A.9 protein.
Length = 158
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +1
Query: 448 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFT--------IQKKSENFGLSNAQLERNKTK 603
+K +RL E ++ + Q M++ASK F +QK++ENF + Q + +
Sbjct: 84 QKLRRLAAQELEQDVVEQKMREASKNKVLFANVLNIFADLQKEAENFSKTTKQSSTSPSS 143
Query: 604 EQLEEEKKISLS 639
EE S S
Sbjct: 144 SSSSEESSASSS 155
>AF170122-1|AAD47840.1| 1139|Caenorhabditis elegans liprin-alpha
homolog SYD-2 protein.
Length = 1139
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 448 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFT--IQKKSENFGLSNAQLERNKTKEQLEEE 621
+K + L E + Q ++A+ A + + IQ+ N +A+LER +E++ EE
Sbjct: 373 KKAESLPSVEAELQQRMEALTAAEQKSVSAEERIQRLDRNIQELSAELERAVQRERMNEE 432
Query: 622 KKISLSIRIKPLTIE 666
LS + L E
Sbjct: 433 HSQRLSSTVDKLLSE 447
>AC024753-9|AAF60460.1| 139|Caenorhabditis elegans Hypothetical
protein Y23H5B.2 protein.
Length = 139
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +1
Query: 451 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKI 630
KRQ+ + +KK ++ A +K+G + KS +Q KEQ E+KK+
Sbjct: 65 KRQQNSKRQKKIKSNSAAPAPPAKSG----VPAKSAEKAKEGSQRSARLKKEQKSEKKKV 120
Query: 631 SLSIRIKPLTIEGLSVDK 684
+ +R E L K
Sbjct: 121 CVDLRSTVYIYEALLFQK 138
>U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical
protein M02B7.5 protein.
Length = 640
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 218 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 322
S+K +G N+STNG N+ RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 451 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
K+Q +A+K L+A A K +I K + FG E + T EQ EEK
Sbjct: 11626 KKQDENDAKKSVSKNLKA--GAKKDSDTLSITSKKDKFGKRQDSREASATVEQQGEEK 11681
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 451 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
K+Q +A+K L+A A K +I K + FG E + T EQ EEK
Sbjct: 11626 KKQDENDAKKSVSKNLKA--GAKKDSDTLSITSKKDKFGKRQDSREASATVEQQGEEK 11681
>Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical
protein T13F3.8 protein.
Length = 212
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 445 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
E+K + ++ EKK + + +K+ K + +KK + G E + E+ +EEK
Sbjct: 95 EKKEEEKKKEEKKEEEKKEEVKEEEKKDDSKRDEKKKD--GEKKEDDENKEDNEKKKEEK 152
Query: 625 K 627
K
Sbjct: 153 K 153
>U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical
protein T24H7.2 protein.
Length = 925
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 439 DIEEKRQRLEE-AEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLE 615
D++E+++R+E AEK+R A +A + NF + E ++ + KTK LE
Sbjct: 672 DVQEEKRRMEAFAEKERLASERAAVENELESFNFECSQYLEETEFTDYMADEEKTK--LE 729
Query: 616 EEKK 627
+ K
Sbjct: 730 DSVK 733
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +1
Query: 445 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 624
++KR+++EE EK+R + +++ K +E L + E+ + ++LEE+K
Sbjct: 94 KQKREKMEEREKQRIERERILEE-----KRLEKDKLAEEKRLDKEKKEKERLDKKLEEDK 148
Query: 625 K 627
K
Sbjct: 149 K 149
>AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical
protein Y43C5A.6b protein.
Length = 357
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 445 EEKRQRLEEAEKKR--QAMLQAM--KDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 612
+ RQ+ + E++ QA+L A +A + NFT+ K E+ G+S+ + + K
Sbjct: 4 QASRQKKSDQEQRAADQALLNAAIEDNAMEQDENFTVIDKLESSGISSGDISKLKEAGYY 63
Query: 613 EEEKKISLSIRIKPLTIEGLSVDK 684
E ++ + R + ++G+S K
Sbjct: 64 TYE-SLAFTTRRELRNVKGISDQK 86
>AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical
protein Y43C5A.6a protein.
Length = 395
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 445 EEKRQRLEEAEKKR--QAMLQAM--KDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 612
+ RQ+ + E++ QA+L A +A + NFT+ K E+ G+S+ + + K
Sbjct: 42 QASRQKKSDQEQRAADQALLNAAIEDNAMEQDENFTVIDKLESSGISSGDISKLKEAGYY 101
Query: 613 EEEKKISLSIRIKPLTIEGLSVDK 684
E ++ + R + ++G+S K
Sbjct: 102 TYE-SLAFTTRRELRNVKGISDQK 124
>AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short
isoform protein.
Length = 357
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 445 EEKRQRLEEAEKKR--QAMLQAM--KDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 612
+ RQ+ + E++ QA+L A +A + NFT+ K E+ G+S+ + + K
Sbjct: 4 QASRQKKSDQEQRAADQALLNAAIEDNAMEQDENFTVIDKLESSGISSGDISKLKEAGYY 63
Query: 613 EEEKKISLSIRIKPLTIEGLSVDK 684
E ++ + R + ++G+S K
Sbjct: 64 TYE-SLAFTTRRELRNVKGISDQK 86
>AB011382-1|BAA24982.1| 357|Caenorhabditis elegans
RecA/Rad51/Dmc1-like protein protein.
Length = 357
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 445 EEKRQRLEEAEKKR--QAMLQAM--KDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 612
+ RQ+ + E++ QA+L A +A + NFT+ K E+ G+S+ + + K
Sbjct: 4 QASRQKKSDQEQRAADQALLNAAIEDNAMEQDENFTVIDKLESSGISSGDISKLKEAGYY 63
Query: 613 EEEKKISLSIRIKPLTIEGLSVDK 684
E ++ + R + ++G+S K
Sbjct: 64 TYE-SLAFTTRRELRNVKGISDQK 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.130 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,476
Number of Sequences: 27780
Number of extensions: 164739
Number of successful extensions: 840
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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