Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31020
(723 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 215 9e-55
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 209 6e-53
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 203 4e-51
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 190 3e-47
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 185 9e-46
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 183 5e-45
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 181 2e-44
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 172 8e-42
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 169 8e-41
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 168 1e-40
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 168 1e-40
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 167 2e-40
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 167 3e-40
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 164 2e-39
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 157 3e-37
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 149 5e-35
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 149 7e-35
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 149 9e-35
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 141 1e-32
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 140 2e-32
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 136 7e-31
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 135 1e-30
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 132 6e-30
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 132 6e-30
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 128 2e-28
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 127 2e-28
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 126 4e-28
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 126 6e-28
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 126 7e-28
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 121 2e-26
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 120 4e-26
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 119 8e-26
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 108 2e-22
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 102 8e-21
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 99 1e-19
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 97 5e-19
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 88 2e-16
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 5e-14
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 80 5e-14
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 80 6e-14
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 79 1e-13
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 79 1e-13
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 77 6e-13
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 75 2e-12
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 75 2e-12
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 74 4e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 3e-11
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 71 4e-11
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 70 5e-11
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 70 5e-11
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 69 9e-11
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 68 3e-10
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 68 3e-10
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 65 1e-09
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 65 2e-09
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 64 4e-09
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 62 1e-08
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 62 2e-08
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 61 2e-08
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 60 5e-08
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 60 7e-08
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 60 7e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 9e-08
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 59 9e-08
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 59 1e-07
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 59 1e-07
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 58 2e-07
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 57 4e-07
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 57 5e-07
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 56 1e-06
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 55 2e-06
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 55 2e-06
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 55 2e-06
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 53 8e-06
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 53 8e-06
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 53 8e-06
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 52 2e-05
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 51 3e-05
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 4e-04
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 47 5e-04
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 47 5e-04
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 46 7e-04
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 46 0.001
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 45 0.002
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 44 0.003
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 44 0.004
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 42 0.012
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 42 0.020
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 41 0.027
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 38 0.25
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 38 0.25
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 38 0.33
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 37 0.44
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 37 0.44
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 35 1.8
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 35 1.8
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 35 2.3
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 33 7.1
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 9.4
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;... 33 9.4
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 215 bits (525), Expect = 9e-55
Identities = 121/227 (53%), Positives = 131/227 (57%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 9 HKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVM 68
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPP
Sbjct: 69 PIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPP 128
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
LSSNIAH G SVDLAIFSLHLAGISS SFDQ+PLFV AVGIT
Sbjct: 129 LSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGIT 188
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDF 683
AF AGAIT+LLTDRNLNTSFF P Y ++++ F
Sbjct: 189 AFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFF 235
Score = 41.5 bits (93), Expect = 0.020
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 625 FLDPAGGGDPNFISTFILIFGHPEVIF*FYQD 720
F DPAGGGDP FGHP+++F F QD
Sbjct: 216 FFDPAGGGDPILYQHLFWFFGHPKLMFSFSQD 247
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 209 bits (510), Expect = 6e-53
Identities = 115/204 (56%), Positives = 134/204 (65%)
Frame = -3
Query: 628 KNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNRXXXXXXXXXXX 449
K +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I +R
Sbjct: 15 KKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVIPADRMLITVVMKFTA 74
Query: 448 XXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGGRSQNL 269
I+E PAKC+EKI STD P CAI SGG TVHPVP P STI L + ++EGG +QNL
Sbjct: 75 PKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSNQNL 134
Query: 268 ILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSPINDPGFPN 89
+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+ L I S PI PG PN
Sbjct: 135 MLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSFPIKLPGCPN 193
Query: 88 SARIKSLKDVPIIPDQIPKIKYNV 17
SARIKSL DVP +P PK+KYNV
Sbjct: 194 SARIKSLSDVPTMPAHAPKMKYNV 217
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 203 bits (495), Expect = 4e-51
Identities = 113/208 (54%), Positives = 125/208 (60%)
Frame = +3
Query: 87 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 266
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 267 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 446
+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 73 MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132
Query: 447 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 626
SFDQ+PLF+ AVGITA AGAIT+LLTDRNLNTSF
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNTSF 192
Query: 627 FGSCWRRRPQFYINIYFDFWTS*SYILI 710
F P Y ++++ F YILI
Sbjct: 193 FDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 190 bits (463), Expect = 3e-47
Identities = 112/239 (46%), Positives = 128/239 (53%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 13 HKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVM 72
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPP 132
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+ N+AH G SVDLAIFSLHLAGISS S Q PLFV +V IT
Sbjct: 133 LAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLIT 192
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
A A IT+LLTDRNLNT+FF P Y ++++ F YILILPG
Sbjct: 193 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 251
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 185 bits (451), Expect = 9e-46
Identities = 108/239 (45%), Positives = 125/239 (52%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 72 PILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+ N+AH G SVDL IFSLHLAG+SS S Q PLFV AV +T
Sbjct: 132 LAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVT 191
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
A A IT+LLTDRNLNT+FF P Y ++++ F YILILPG
Sbjct: 192 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 250
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 183 bits (445), Expect = 5e-45
Identities = 106/239 (44%), Positives = 125/239 (52%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 72 PVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+ N+AH G SVDL IFSLHLAG+SS + Q PLFV +V +T
Sbjct: 132 LAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVT 191
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
A A IT+LLTDRNLNT+FF P Y ++++ F YILILPG
Sbjct: 192 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 250
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 181 bits (440), Expect = 2e-44
Identities = 105/239 (43%), Positives = 125/239 (52%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 12 HKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVM 71
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPP
Sbjct: 72 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPP 131
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+ N +H G SVDL IFSLHLAG+SS + Q PLFV +V IT
Sbjct: 132 LAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLIT 191
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
A A IT+LLTDRNLNT+FF P Y ++++ F YILILPG
Sbjct: 192 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG 250
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 172 bits (418), Expect = 8e-42
Identities = 98/209 (46%), Positives = 111/209 (53%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+ N+AH G SVDL IFSLHLAGISS S Q PLFV AV IT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLIT 180
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFF 629
A A IT+LLTDRNLNT+FF
Sbjct: 181 AVLLLLSLPVLAAGITMLLTDRNLNTTFF 209
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 169 bits (410), Expect = 8e-41
Identities = 98/241 (40%), Positives = 123/241 (51%), Gaps = 2/241 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 176
HKDIGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 13 HKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFM 72
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 356
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVY
Sbjct: 73 VMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVY 132
Query: 357 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 536
PPLS +H G +VDLAIFSLHL+G+SS + +LPLFV +V
Sbjct: 133 PPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVL 192
Query: 537 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+TAF AGAIT+LLTDRN NT+FF P Y ++++ F YILILP
Sbjct: 193 VTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILP 252
Query: 717 G 719
G
Sbjct: 253 G 253
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 168 bits (409), Expect = 1e-40
Identities = 95/227 (41%), Positives = 118/227 (51%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 13 HKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVM 72
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPP
Sbjct: 73 PTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPP 132
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+S AH G SVD+AIFSLHLAG+SS + ++PLFV +V IT
Sbjct: 133 LASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLIT 192
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDF 683
A AGAIT+LLTDR NT+FF P Y ++++ F
Sbjct: 193 AILLLLSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFF 239
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 168 bits (408), Expect = 1e-40
Identities = 98/241 (40%), Positives = 125/241 (51%), Gaps = 2/241 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 176
HKDIGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 18 HKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFM 77
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 356
N LVP+++G+PD+AFPR+NNI F +VE G GTG TVY
Sbjct: 78 VMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVY 137
Query: 357 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 536
PPLSS +H G +VDLAIFSLH++G SS S ++PLFV ++
Sbjct: 138 PPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSIL 197
Query: 537 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+TAF AGAIT+LLTDRN NTSFF + P Y ++++ F YILILP
Sbjct: 198 VTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILP 257
Query: 717 G 719
G
Sbjct: 258 G 258
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 167 bits (407), Expect = 2e-40
Identities = 101/240 (42%), Positives = 121/240 (50%), Gaps = 2/240 (0%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
TA AGAIT+LLTDRN NTSF+ P Y ++++ F YILI+PG
Sbjct: 191 TAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPG 250
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 167 bits (405), Expect = 3e-40
Identities = 92/197 (46%), Positives = 109/197 (55%)
Frame = +3
Query: 87 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 266
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 267 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 446
+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 83 MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142
Query: 447 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 626
+ + LFV +V ITA AGAIT+LLTDRN NTSF
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSF 202
Query: 627 FGSCWRRRPQFYINIYF 677
F P Y ++++
Sbjct: 203 FDPAGGGDPILYQHLFW 219
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 164 bits (398), Expect = 2e-39
Identities = 93/211 (44%), Positives = 115/211 (54%)
Frame = +3
Query: 87 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 266
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83
Query: 267 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 446
+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 84 MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143
Query: 447 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 626
+ D++ LF +V ITA AGAIT+LLTDRN+NTSF
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNTSF 203
Query: 627 FGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
F P Y ++++ F YILILPG
Sbjct: 204 FDPSGGGDPILYQHLFWFFGHPEVYILILPG 234
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 157 bits (380), Expect = 3e-37
Identities = 94/225 (41%), Positives = 112/225 (49%), Gaps = 2/225 (0%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIY 674
TA AGAIT+LLTDRN NTSF+ P Y +++
Sbjct: 191 TAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 149 bits (362), Expect = 5e-35
Identities = 93/239 (38%), Positives = 113/239 (47%), Gaps = 1/239 (0%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 182
KDIG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 13 KDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVM 72
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N L+PL LG PD+ FPR+NNI + +ENG GTG T+YPP
Sbjct: 73 PALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPP 132
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
LS +H G SVDLAIF LHL+GISS +L LF AV IT
Sbjct: 133 LSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVIT 192
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
A AG IT++LTDRN NTSFF P Y ++++ F YILI+PG
Sbjct: 193 AVLLLLSLPVLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPG 251
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 149 bits (361), Expect = 7e-35
Identities = 94/240 (39%), Positives = 115/240 (47%), Gaps = 2/240 (0%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PLSS AH G SVDLAIF+LHL ISS + +LPLFV ++ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFI 191
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
TAF + IT+LL DRN NTSFF P Y ++++ F YILI+PG
Sbjct: 192 TAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPG 251
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 149 bits (360), Expect = 9e-35
Identities = 93/240 (38%), Positives = 116/240 (48%), Gaps = 2/240 (0%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI +Y EL PGS L G+ Q++N +V HA
Sbjct: 12 KDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLA 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N ++PL++GA D++FPRIN+I F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PLSS AH G SVDLAIFSLHL ISS S ++PLFV A+ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFI 191
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
TAF + IT+LL DRN NTSFF P FY + ++ F YILI+PG
Sbjct: 192 TAFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPG 251
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 141 bits (342), Expect = 1e-32
Identities = 90/238 (37%), Positives = 114/238 (47%), Gaps = 2/238 (0%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PLSS AH G SVDLAIF+LHL ISS + +LPLFV ++ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFI 191
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILIL 713
TAF + IT+LL DRN NTSFF P Y ++++ F + + I++L
Sbjct: 192 TAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 140 bits (340), Expect = 2e-32
Identities = 86/239 (35%), Positives = 111/239 (46%), Gaps = 1/239 (0%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 182
KDI LY EL PG I D+Q+YN+I+T+H
Sbjct: 39 KDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVM 98
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N L+P+++G PD+AFPR+NN+ + I+ENG GTG T+YPP
Sbjct: 99 PALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPP 158
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
LS +H VDL IF LHL+GISS +L LF AV IT
Sbjct: 159 LSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVIT 218
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
A A AIT+LLTDRNLNTSF+ Y ++++ F YILI+PG
Sbjct: 219 AVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPG 277
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 136 bits (328), Expect = 7e-31
Identities = 87/241 (36%), Positives = 104/241 (43%), Gaps = 2/241 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 176
HK IG LY EL PG L G+ YN I T H
Sbjct: 14 HKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVV 73
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 356
N VP+++GAPD++FPR+NN F E G GTG TVY
Sbjct: 74 VMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVY 133
Query: 357 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 536
PPLSS +H G SVDL IFS HL GI S LPLFV +V
Sbjct: 134 PPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVA 193
Query: 537 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+T+F A AIT+LL DRN NTSF+ Y ++++ F YILILP
Sbjct: 194 VTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILP 253
Query: 717 G 719
G
Sbjct: 254 G 254
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 135 bits (326), Expect = 1e-30
Identities = 84/231 (36%), Positives = 109/231 (47%), Gaps = 2/231 (0%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL PG L G++Q++N +V HA
Sbjct: 12 KDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMV 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N ++PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PL+S AH G SVDLAIF+LH+ ISS + +LPLFV A+ I
Sbjct: 132 PLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILI 191
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS 692
TA + +T+LL DRN NTSFF P Y ++++ F T+
Sbjct: 192 TAVLLLLTLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFGTT 242
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 132 bits (320), Expect = 6e-30
Identities = 76/207 (36%), Positives = 106/207 (51%)
Frame = +3
Query: 96 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 275
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 276 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 455
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 456 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGS 635
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 636 CWRRRPQFYINIYFDFWTS*SYILILP 716
P Y +I++ F YILI+P
Sbjct: 241 SGGGDPLLYEHIFWFFGHPEVYILIVP 267
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 132 bits (320), Expect = 6e-30
Identities = 76/207 (36%), Positives = 106/207 (51%)
Frame = +3
Query: 96 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 275
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 276 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 455
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 456 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGS 635
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 636 CWRRRPQFYINIYFDFWTS*SYILILP 716
P Y +I++ F YILI+P
Sbjct: 241 SGGGDPLLYEHIFWFFGHPEVYILIVP 267
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 128 bits (308), Expect = 2e-28
Identities = 79/194 (40%), Positives = 92/194 (47%), Gaps = 2/194 (1%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 540 TAFXXXXXXXXXAG 581
TA AG
Sbjct: 191 TAILLLLSLPVLAG 204
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 127 bits (307), Expect = 2e-28
Identities = 86/243 (35%), Positives = 112/243 (46%), Gaps = 5/243 (2%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 182
KDIGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 41 KDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVM 100
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV--- 353
N L+PL++G PD+AFPR+NNI F I+E G GTG T+
Sbjct: 101 PALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKD 160
Query: 354 -YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 530
YPPLS +H G SVDLAIF+LHL+G+SS +L LF A
Sbjct: 161 KYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWA 220
Query: 531 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILI 710
+ IT++LTDRN NTSFF P + ++++ F YILI
Sbjct: 221 TWSSRSRYFL-------GITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILI 273
Query: 711 LPG 719
+PG
Sbjct: 274 IPG 276
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 126 bits (305), Expect = 4e-28
Identities = 73/206 (35%), Positives = 104/206 (50%)
Frame = +3
Query: 96 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 275
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 276 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 455
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 456 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGS 635
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 636 CWRRRPQFYINIYFDFWTS*SYILIL 713
P Y +I++ F I+I+
Sbjct: 241 SGGGDPLLYEHIFWFFGQIWPIIIII 266
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 126 bits (304), Expect = 6e-28
Identities = 90/259 (34%), Positives = 118/259 (45%), Gaps = 20/259 (7%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY---N 134
HKDIGTLY AEL PG + D DQ Y N
Sbjct: 36 HKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWN 95
Query: 135 TIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXX 314
++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 96 VLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLGS 155
Query: 315 XIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 482
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 156 TFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNM 214
Query: 483 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFY 662
+ ++PLFV +V +TAF A AIT+LLTDRN T+F+ + P+ Y
Sbjct: 215 RAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPELY 274
Query: 663 INIYFDFWTS*SYILILPG 719
++++ F YI+ILPG
Sbjct: 275 QHLFWFFGHPEVYIMILPG 293
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 126 bits (303), Expect = 7e-28
Identities = 70/194 (36%), Positives = 99/194 (51%)
Frame = +3
Query: 96 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 275
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 276 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 455
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 456 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGS 635
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 636 CWRRRPQFYINIYF 677
P Y +I++
Sbjct: 241 SGGGDPLLYEHIFY 254
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 121 bits (291), Expect = 2e-26
Identities = 77/210 (36%), Positives = 96/210 (45%), Gaps = 2/210 (0%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYF 136
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PL+ +H G +VDLAIFSLHL+G SS ++ +PLF AV
Sbjct: 137 PLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLF 196
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFF 629
TA A +T+ + DRN NTSFF
Sbjct: 197 TAILLLLSLPVLAAGLTMGIFDRNFNTSFF 226
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 120 bits (289), Expect = 4e-26
Identities = 71/152 (46%), Positives = 84/152 (55%)
Frame = +3
Query: 222 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 401
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 402 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 581
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 582 AITILLTDRNLNTSFFGSCWRRRPQFYINIYF 677
AIT+LLTDRN+NTSFF P Y ++++
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFW 155
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 119 bits (286), Expect = 8e-26
Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 2/213 (0%)
Frame = +3
Query: 84 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 257
A LG L G D ++N ++T H N +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202
Query: 258 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 437
+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262
Query: 438 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 617
S + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFG 322
Query: 618 TSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
T+FF P + +I++ F YI+ILP
Sbjct: 323 TTFFDPAGGGDPILFQHIFWFFGHPEVYIVILP 355
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 108 bits (259), Expect = 2e-22
Identities = 69/240 (28%), Positives = 99/240 (41%), Gaps = 2/240 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 176
HK IGT Y EL +PG G Q+YN+++T H
Sbjct: 21 HKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFL 80
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 356
N ++PL+LGAP++AFPR+N + F + G G+ T Y
Sbjct: 81 VMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFY 140
Query: 357 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 536
PPLS S+D I LH GI S + DQ+ +FV
Sbjct: 141 PPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSY 199
Query: 537 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+T+F AG++ LL DRN NTSF+ + P Y ++++ F Y++ILP
Sbjct: 200 LTSFLLVLSVPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILP 259
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 102 bits (245), Expect = 8e-21
Identities = 62/205 (30%), Positives = 88/205 (42%)
Frame = +3
Query: 102 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 281
G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 282 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 461
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 462 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCW 641
SF LF+ A ITA AG +T++L DRN NTSF+
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVG 227
Query: 642 RRRPQFYINIYFDFWTS*SYILILP 716
+ +I++ F YI++LP
Sbjct: 228 GGDLILFQHIFWFFGHPEVYIILLP 252
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 99.1 bits (236), Expect = 1e-19
Identities = 66/239 (27%), Positives = 102/239 (42%), Gaps = 1/239 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIGT+Y EL +PG + +Y++I+T HA
Sbjct: 14 HKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVM 73
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N +PL++ D++ PR+NN+ + G G G T+YPP
Sbjct: 74 PTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPP 133
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGI 539
LS++ G +DLA+FSLH+AG+SS F L P+ + +
Sbjct: 134 LSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFG 193
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
T+ A +T+LL DR+ +TSF+ P + ++++ F YILILP
Sbjct: 194 TSILLVTSVPVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILP 252
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 96.7 bits (230), Expect = 5e-19
Identities = 56/122 (45%), Positives = 64/122 (52%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKD GTL AELG PG+L+GDDQ N IVTAHA
Sbjct: 13 HKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXM 72
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPP 132
Query: 363 LS 368
L+
Sbjct: 133 LA 134
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 88.2 bits (209), Expect = 2e-16
Identities = 51/118 (43%), Positives = 61/118 (51%)
Frame = +3
Query: 87 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 266
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+NN
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 267 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 440
+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 84 MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 5e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 222 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 401
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 402 LAIFS 416
LAI+S
Sbjct: 61 LAIYS 65
Score = 42.3 bits (95), Expect = 0.012
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = +2
Query: 521 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIFW 631
CM C +Y TCFS S+Y IIN K KY IFW
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFW 133
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 80.2 bits (189), Expect = 5e-14
Identities = 53/199 (26%), Positives = 84/199 (42%)
Frame = +3
Query: 123 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 302
+IYN + T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 303 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 482
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177
Query: 483 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFY 662
D++ ++ +T+F ++ DR+ NT FF S P Y
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLY 237
Query: 663 INIYFDFWTS*SYILILPG 719
++++ F YI+ILPG
Sbjct: 238 QHLFWFFGHPEVYIMILPG 256
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 79.8 bits (188), Expect = 6e-14
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 1/198 (0%)
Frame = +3
Query: 126 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 305
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 306 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 482
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 483 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFY 662
+ L + ++ IT+ G + +LL+D + NT FF + P Y
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILY 237
Query: 663 INIYFDFWTS*SYILILP 716
++++ F YILILP
Sbjct: 238 QHLFWFFGHPEVYILILP 255
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 79.0 bits (186), Expect = 1e-13
Identities = 79/210 (37%), Positives = 91/210 (43%), Gaps = 1/210 (0%)
Frame = +3
Query: 3 HKDIGTL-YXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 179
HKD GTL + L G +IG QI VTA A
Sbjct: 1 HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
L PL +GAP +A PR+ N+ F + G G VYP
Sbjct: 61 MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
P SS +AH +VDL IF LHLAGISS ++ LF
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVX 180
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFF 629
A AIT+L R N SFF
Sbjct: 181 XXXXLILSXPVLAAAITMLXXXRXXNXSFF 210
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 78.6 bits (185), Expect = 1e-13
Identities = 50/126 (39%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKC 130
Query: 360 PLSSNI 377
LS I
Sbjct: 131 KLSQII 136
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 76.6 bits (180), Expect = 6e-13
Identities = 70/246 (28%), Positives = 99/246 (40%), Gaps = 8/246 (3%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIG LY EL +PG + + YN+++T+H
Sbjct: 94 HKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFAT 153
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRF--XXXXXXXXXXXXXXIVE-NGAGTG*TV 353
N L+PL++GA D+AFPRIN I F I E A TG T+
Sbjct: 154 PIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTM 212
Query: 354 YPPLS-----SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 518
Y PLS N A+ G VDL + LHL+G+S+ S+ L +
Sbjct: 213 YTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDI 270
Query: 519 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*S 698
F + + AI +LL DRN TSFF + ++++ F
Sbjct: 271 FSWTILTQSGLILFAFPLLGSAIMMLLFDRNFGTSFFAG--EGGAILWQHLFWFFGHPEV 328
Query: 699 YILILP 716
YI++LP
Sbjct: 329 YIIVLP 334
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 74.9 bits (176), Expect = 2e-12
Identities = 56/206 (27%), Positives = 82/206 (39%)
Frame = +3
Query: 99 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 278
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 279 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 458
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 459 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSC 638
+F + LFV + AGA+T+L D+ L T+FF
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 639 WRRRPQFYINIYFDFWTS*SYILILP 716
P Y NI++ + Y+ +LP
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLP 205
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 74.5 bits (175), Expect = 2e-12
Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 176
HKDIGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 14 HKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFM 73
Query: 177 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 353
N VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 74 VMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 73.7 bits (173), Expect = 4e-12
Identities = 62/238 (26%), Positives = 93/238 (39%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
H D+ LY +L P L D +YN VT H
Sbjct: 9 HIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAM 66
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N L+P PD+ FPR+N + F ++ + A G T YPP
Sbjct: 67 PTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPP 121
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
LSS SV+ ++FSLHLAGI+S + L LF ++ +
Sbjct: 122 LSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLV 175
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+ A IT++LTD++L T F+ + P Y ++++ F Y++ILP
Sbjct: 176 SLLLVLSLPVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILP 233
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +3
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 540 TAFXXXXXXXXXAGAITILLTDR 608
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.1 bits (77), Expect = 1.8
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 194 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 319
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 70.5 bits (165), Expect = 4e-11
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 6/244 (2%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI----GDDQIYNTIVTAHAXXXXX 170
HK IG LY EL G I + IYN +T H
Sbjct: 18 HKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLF 77
Query: 171 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXI-VENGAGTG* 347
N L+P+++G +++ PR+N I F + + +G
Sbjct: 78 VFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGW 137
Query: 348 TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 524
T+YPPLS+ A G ++DL++ +H+ GISS +F + ++
Sbjct: 138 TLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYN 197
Query: 525 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYI 704
++ +T+ AIT LL DRN+N++ + P Y ++++ F Y+
Sbjct: 198 FSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVI--GDPVLYQHLFWFFGHPEVYV 255
Query: 705 LILP 716
+ILP
Sbjct: 256 IILP 259
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 70.1 bits (164), Expect = 5e-11
Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 6/202 (2%)
Frame = +3
Query: 129 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 308
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 309 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 485
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 486 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF--GSCWRR---R 650
++ +LPL + + +TA A +LL DR+ T FF G+ R
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265
Query: 651 PQFYINIYFDFWTS*SYILILP 716
P + ++++ F YI+ILP
Sbjct: 266 PILWQHLFWIFGHPEVYIMILP 287
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 70.1 bits (164), Expect = 5e-11
Identities = 64/239 (26%), Positives = 87/239 (36%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG LY L +P + +YN +VT H
Sbjct: 110 HKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLM 169
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N +P+ L D+ PR+N++ G G G T+YPP
Sbjct: 170 PILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPP 227
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
LS G VD +FSLHLAG+SS S + V A T
Sbjct: 228 LSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFT 281
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
+ A IT+LL DRN T+FF P + ++++ F Y+LILPG
Sbjct: 282 SVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPG 340
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 69.3 bits (162), Expect = 9e-11
Identities = 58/240 (24%), Positives = 92/240 (38%), Gaps = 2/240 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIG LY EL + +YN ++T+H
Sbjct: 68 HKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGT 127
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVY 356
N +PL++ A D+AFPRIN I F ++ A T T+Y
Sbjct: 128 PMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMY 186
Query: 357 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 536
PLS ++ +VD+ + LHL G+S+ + L +F +
Sbjct: 187 TPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTML 244
Query: 537 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+ A+ +LL DRN T+FF + P F+ ++++ F Y+L+LP
Sbjct: 245 TQSGLILFAFPLFGSALIMLLLDRNFGTTFF-TVAGGDPIFWQHLFWFFGHPEVYVLVLP 303
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 67.7 bits (158), Expect = 3e-10
Identities = 58/239 (24%), Positives = 86/239 (35%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG +Y +L P + +++N + T H
Sbjct: 32 HKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGM 91
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N VPL++GA D+AFPR+N+ F + + G Y P
Sbjct: 92 PVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVP 150
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
LSS + VD I L + GI S S ++PLFV + +
Sbjct: 151 LSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQ 210
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
A A+ +LL DR L ++FF + + ++ F YILILPG
Sbjct: 211 AILIILALPALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPG 269
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 67.7 bits (158), Expect = 3e-10
Identities = 55/238 (23%), Positives = 83/238 (34%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK +G +Y A+L P + D YN I T H
Sbjct: 53 HKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAM 112
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N +VPL +GA D+AFP +NN+ F ++ G T Y P
Sbjct: 113 PFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMP 171
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+SN G + + L +AGI + + ++P+F IT
Sbjct: 172 LASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLIT 231
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
A+ +L DR FF P + N+++ + YI+ILP
Sbjct: 232 MVIIVFAFPVLTVALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILP 289
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 65.3 bits (152), Expect = 1e-09
Identities = 44/126 (34%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKK 136
Query: 360 PLSSNI 377
SS +
Sbjct: 137 ICSSKM 142
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 64.9 bits (151), Expect = 2e-09
Identities = 59/241 (24%), Positives = 88/241 (36%), Gaps = 1/241 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIG LY +L P S Y VT H
Sbjct: 21 HKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFAS 80
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYP 359
N +VPL +GA D+AFPR+N + + E+GA G T+Y
Sbjct: 81 PFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYA 139
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PL++ I G +DLA ++ L +S + ++P+F ++
Sbjct: 140 PLTARIYTPGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILF 199
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
T +LL DRNL T FF + + ++++ F YIL+ P
Sbjct: 200 TVILMLWAFPPLMVGGALLLLDRNLGTEFFLNP-AGGALLWDHLFWFFGHPEVYILLFPA 258
Query: 720 L 722
L
Sbjct: 259 L 259
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 63.7 bits (148), Expect = 4e-09
Identities = 61/238 (25%), Positives = 83/238 (34%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG Y EL P ++YN ++T H
Sbjct: 27 HKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIV 86
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N L+PL++G D+AFPR+N + F V G T YPP
Sbjct: 87 PAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPP 144
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
LS G +L I SL L G SS +PLF A+ T
Sbjct: 145 LSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLAT 202
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+ A A+ +L D TSFF P Y ++++ + YI+ILP
Sbjct: 203 SSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILP 260
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 62.1 bits (144), Expect = 1e-08
Identities = 57/239 (23%), Positives = 87/239 (36%), Gaps = 1/239 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG ++ EL PG I D YN T H
Sbjct: 42 HKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMI 101
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N ++PL+LGA D+AFPR+N + ++ G TG T Y P
Sbjct: 102 PAIPAVFGNFMLPLMLGAKDVAFPRLNLLSL-YIYLAGAVLALWGMLNGGLDTGWTFYTP 160
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
S AH +V +F + G SS ++ ++PLFV A+ T
Sbjct: 161 YS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYAT 217
Query: 543 AFXXXXXXXXXAGAITILLTDRNL-NTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+ G + +L+T NL F P + ++++ + YI++LP
Sbjct: 218 S-CIQVLATPVIGLLLVLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLP 275
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 61.7 bits (143), Expect = 2e-08
Identities = 56/238 (23%), Positives = 82/238 (34%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG +Y +LG P + +YN + T H
Sbjct: 31 HKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLM 90
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N +VPL++GA D+AFPR+N + V G Y P
Sbjct: 91 PLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAP 149
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+ VD I + L G++S + +++PLFV +
Sbjct: 150 LTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVV 209
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
AF A LL DR+ T FF + ++++ F YILILP
Sbjct: 210 AFILIFAFPVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILP 267
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 61.3 bits (142), Expect = 2e-08
Identities = 53/240 (22%), Positives = 86/240 (35%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG ++ EL PG I D YN + T H
Sbjct: 35 HKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMI 94
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N L+P+++GA D+AFP++N + F +V+ GA TG T Y P
Sbjct: 95 PAIPSGFGNFLLPIMIGAKDVAFPKLNLLSF-YVYLAGAVVALFGMVQGGADTGWTFYTP 153
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
S+ + V L F L G SS + +LPLFV ++ T
Sbjct: 154 YSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYAT 210
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPGL 722
+ ++ ++ + F P + + ++ + YI++LP +
Sbjct: 211 SVIQILATPVLGMSLLLVAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAM 270
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 60.1 bits (139), Expect = 5e-08
Identities = 52/213 (24%), Positives = 81/213 (38%), Gaps = 3/213 (1%)
Frame = +3
Query: 87 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 266
EL P + + D +YN + T H N L+P ++GAPD+AFP++N
Sbjct: 64 ELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKLNA 122
Query: 267 IRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAGIS 437
F G A +G YPP+S + + H L I ++ L+GIS
Sbjct: 123 AAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSGIS 182
Query: 438 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 617
S F ++P+FV G +LL D +
Sbjct: 183 SIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVMLLFDLSFG 242
Query: 618 TSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
TSFF P + + ++ + Y+L+LP
Sbjct: 243 TSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLP 275
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 59.7 bits (138), Expect = 7e-08
Identities = 44/170 (25%), Positives = 68/170 (40%)
Frame = +3
Query: 207 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 386
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 387 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 566
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 567 XXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
GA+ +L DR L+ FF + Y+N+++ + YIL+LP
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLP 294
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 59.7 bits (138), Expect = 7e-08
Identities = 44/170 (25%), Positives = 66/170 (38%)
Frame = +3
Query: 207 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 386
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 387 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 566
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 567 XXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
A+ +L DR L+ F + P Y+N+++ + YILILP
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILP 293
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 9e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 318 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 440
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 59.3 bits (137), Expect = 9e-08
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = +3
Query: 6 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 179
KDI LY EL PG+ L G+ Q++N +V HA
Sbjct: 12 KDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLV 71
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 353
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 72 MPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 58.8 bits (136), Expect = 1e-07
Identities = 57/241 (23%), Positives = 85/241 (35%), Gaps = 1/241 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXX 179
HK IG Y +L P + IG D+ YN I T H
Sbjct: 29 HKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFA 87
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
LVPL++G IAFPR+N + V+ G G Y
Sbjct: 88 VPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYV 146
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PLS G+ D+ + +S+ S D++PLFV ++ +
Sbjct: 147 PLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLV 206
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
T+F A T L+ DR + T FF + ++++ F YI+ LP
Sbjct: 207 TSFLVILAMPAIMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPA 266
Query: 720 L 722
+
Sbjct: 267 V 267
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 58.8 bits (136), Expect = 1e-07
Identities = 57/240 (23%), Positives = 87/240 (36%), Gaps = 2/240 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXX 179
HK +G LY EL G I DD +YNT + H
Sbjct: 14 HKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQ 73
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N +PL++GA D+AFPR+N + + + T YP
Sbjct: 74 IPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYP 133
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
P S I H + FS+ L G +S +++L +FV A +
Sbjct: 134 PYSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-L 189
Query: 540 TAFXXXXXXXXXAG-AITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
AF G A+T+L D+ + T FF + Y N+++ + Y++ LP
Sbjct: 190 AAFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLP 249
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 58.0 bits (134), Expect = 2e-07
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 4/173 (2%)
Frame = +3
Query: 123 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 302
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 303 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 470
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 471 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 629
+ +LPL + A+ ITA A ++L DR + T FF
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFF 258
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 57.2 bits (132), Expect = 4e-07
Identities = 52/241 (21%), Positives = 83/241 (34%), Gaps = 1/241 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG +Y +L P + + YN I+T H
Sbjct: 24 HKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFII 83
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYP 359
N +VPL+LGA D+A PR+N + GA G T Y
Sbjct: 84 QAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYY 143
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
P S A VD + ++ L G SS S ++P++V +V
Sbjct: 144 PFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFA 200
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
+ A ++L +R + S+F P + ++ + Y+++LP
Sbjct: 201 ASVLNLFSLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPY 260
Query: 720 L 722
L
Sbjct: 261 L 261
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 56.8 bits (131), Expect = 5e-07
Identities = 41/170 (24%), Positives = 69/170 (40%)
Frame = +3
Query: 207 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 386
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 387 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 566
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 567 XXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+ + DR L+T F+ S + + YIN+ + + YILILP
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILP 288
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 55.6 bits (128), Expect = 1e-06
Identities = 48/238 (20%), Positives = 82/238 (34%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK I LY +L P + Q YN ++T H
Sbjct: 24 HKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAM 83
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N +VPL +GA D++FP +N + F + G T Y
Sbjct: 84 PLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYAS 142
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
LS + +G +D + L ++G+ + ++ +LPLF +
Sbjct: 143 LS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVA 200
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+ + +++ DR T+FF + ++++ F YILILP
Sbjct: 201 SALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILP 258
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 54.8 bits (126), Expect = 2e-06
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 6/178 (3%)
Frame = +3
Query: 207 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 383
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 384 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 563
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 564 XXXXAGAITILLTDRNLNTSFF-----GSCWRRRPQFYINIYFDFWTS*SYILILPGL 722
A +LL +R+L FF P+ + +I++ F YIL+LP +
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAM 261
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 54.8 bits (126), Expect = 2e-06
Identities = 56/241 (23%), Positives = 88/241 (36%), Gaps = 1/241 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXX 179
H D+G LY AEL PG+ I D +N + T H
Sbjct: 20 HTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFI 79
Query: 180 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 359
N VP+++ D+A+P++N I F + T P
Sbjct: 80 LPFASAVG-NYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----P 133
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
P S I+ G + D+ IF L + GISS S Q+PL +
Sbjct: 134 PYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLS 192
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
++ A A+ +LLTDR + FF P Y ++++ + Y+L++P
Sbjct: 193 SSLIVLVALPTFAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPA 252
Query: 720 L 722
+
Sbjct: 253 I 253
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 54.8 bits (126), Expect = 2e-06
Identities = 52/239 (21%), Positives = 82/239 (34%), Gaps = 1/239 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK +G +Y AEL PG ++ +N + T H
Sbjct: 38 HKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGT 97
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYP 359
N ++PL +GAPD+AFPR+N F + GA G T+Y
Sbjct: 98 PIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYS 156
Query: 360 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 539
PLS I G D+ I + GI S + ++P+F + +
Sbjct: 157 PLSDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFV 216
Query: 540 TAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+ A +L DR L + + ++++ F Y+L LP
Sbjct: 217 VSVLALLIFPLLLAAALGVLYDRKLGGHLYDPA-NGGSLLWQHLFWFFGHPEVYVLALP 274
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 52.8 bits (121), Expect = 8e-06
Identities = 53/244 (21%), Positives = 84/244 (34%), Gaps = 4/244 (1%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG +Y +L PG + + +N + T HA
Sbjct: 29 HKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVM 88
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*T 350
N +PL++GA D+AFPR+N + ++ G G
Sbjct: 89 PLLSAFM-NYFLPLMIGARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWF 147
Query: 351 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 530
Y L+S G D L L GI + + ++P+FV
Sbjct: 148 GYANLTSVQFTSGLGPDFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWT 207
Query: 531 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILI 710
+T+ A+ +L+ DR +FF FY ++++ F YILI
Sbjct: 208 TLVTSAIIIFAFPSVTVALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILI 267
Query: 711 LPGL 722
LP +
Sbjct: 268 LPAM 271
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 52.8 bits (121), Expect = 8e-06
Identities = 45/170 (26%), Positives = 65/170 (38%)
Frame = +3
Query: 207 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 386
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 387 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 566
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 567 XXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
L DR L+ FF + ++N+++ F YILILP
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILP 313
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 52.8 bits (121), Expect = 8e-06
Identities = 51/240 (21%), Positives = 83/240 (34%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG Y +L P + + Y+++ T H
Sbjct: 49 HKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYAL 108
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N L PL+LG+ D+AFPR+ + + G Y P
Sbjct: 109 PVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVP 167
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+S G ++D+ + L GIS+ S D+LP+ V
Sbjct: 168 LTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTA 227
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPGL 722
+ + A +L DRN T FF RP + ++++ F Y+++LP +
Sbjct: 228 SVSNLVAVPSVSLAFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAM 287
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 51.6 bits (118), Expect = 2e-05
Identities = 21/36 (58%), Positives = 24/36 (66%)
Frame = +2
Query: 524 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIFW 631
M C +YS +TC WSYYN IN SKLKYI+FW
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFW 119
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 50.8 bits (116), Expect = 3e-05
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 4/175 (2%)
Frame = +3
Query: 117 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 296
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 297 XXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 464
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 465 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 629
SF +LPL + A ITA A +L+ DR+L TSFF
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFF 272
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 47.2 bits (107), Expect = 4e-04
Identities = 35/127 (27%), Positives = 42/127 (33%)
Frame = +2
Query: 251 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 430
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 431 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 610
CM +YS + S+YNI K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198
Query: 611 LKYIIFW 631
KY W
Sbjct: 199 PKYKFLW 205
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 46.8 bits (106), Expect = 5e-04
Identities = 37/168 (22%), Positives = 64/168 (38%)
Frame = +3
Query: 213 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 392
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 393 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 572
S D + + LA I+S S ++P+ + + TAF
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPP 243
Query: 573 XAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
+L +R L FF P + ++++ F YI+ LP
Sbjct: 244 LIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLP 291
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 46.8 bits (106), Expect = 5e-04
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 1/170 (0%)
Frame = +3
Query: 213 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 389
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 390 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 569
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 570 XXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPG 719
G +LL ++ S++ S + + N+++ F Y+L+LPG
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNY-GGALMWENLFWYFGHPEVYLLLLPG 279
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 46.4 bits (105), Expect = 7e-04
Identities = 46/238 (19%), Positives = 79/238 (33%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
H D+G ++ A+L P S + YN + T H
Sbjct: 29 HTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAI 88
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
L+P +LG+ D+AFPR+ F + +G +YPP
Sbjct: 89 PVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPP 147
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
LSS + G + D + + IS+ S ++P+F +T
Sbjct: 148 LSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVT 207
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
A +L +R + FF + + ++++ F YI+ LP
Sbjct: 208 AVMILTGFPPLILGSILLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLP 265
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 46.0 bits (104), Expect = 0.001
Identities = 45/211 (21%), Positives = 71/211 (33%), Gaps = 2/211 (0%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HKDIG LY EL + G+ + YN V+ H
Sbjct: 22 HKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFIS 81
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N LVPL +GA D+AFPR+N + + G T+Y P
Sbjct: 82 PFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAP 140
Query: 363 LS--SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 536
L+ + I G + +L + + +P+F ++
Sbjct: 141 LNTPAYIPGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSIN 200
Query: 537 ITAFXXXXXXXXXAGAITILLTDRNLNTSFF 629
+T + A+ IL +D L T++F
Sbjct: 201 LTVWMMLFAFAALLAALMILASDHILGTTYF 231
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 45.2 bits (102), Expect = 0.002
Identities = 37/170 (21%), Positives = 64/170 (37%)
Frame = +3
Query: 213 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 392
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 393 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 572
+D + IS+ S +++P+FV AV + +F
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPP 224
Query: 573 XAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPGL 722
A +L DR FF + P + ++++ F YI+ +P L
Sbjct: 225 LVIASLMLALDRMAGMHFFTAA-SGDPILWQHLFWFFGHPEVYIIFIPAL 273
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 44.4 bits (100), Expect = 0.003
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 1/173 (0%)
Frame = +3
Query: 207 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 383
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 384 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 563
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKVP--YLKMPLFVWGFFTTAILMIIA 196
Query: 564 XXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPGL 722
+ +R T FF S P + +++ F YILILP +
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAM 249
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 44.0 bits (99), Expect = 0.004
Identities = 47/186 (25%), Positives = 68/186 (36%), Gaps = 5/186 (2%)
Frame = +3
Query: 87 ELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 263
+LG PG+ D Y +T H N L+PL++GA D+ FP +N
Sbjct: 66 QLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVN 125
Query: 264 NIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIFSLHLAGI 434
+ + V G G G T+YPP + S + + L + SL L I
Sbjct: 126 MLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLILFII 185
Query: 435 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAITILLTDRN 611
+ +LPL V + T G++ +LL DR
Sbjct: 186 GFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLLL-DRL 244
Query: 612 LNTSFF 629
L TSFF
Sbjct: 245 LGTSFF 250
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 42.3 bits (95), Expect = 0.012
Identities = 47/240 (19%), Positives = 74/240 (30%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
HK IG LY +L P + YN ++T HA
Sbjct: 32 HKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLI 91
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
N +PL LG D+A PR+N G T Y P
Sbjct: 92 PLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYP 151
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+ + G SV + ++ L G+ S ++P+F ++ T
Sbjct: 152 LTMDGNQTGVSVFMV--AVILNGLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFAT 209
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILPGL 722
+ A + + L S F P Y ++ + Y+++LP L
Sbjct: 210 SILQLLTLGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYL 269
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 41.5 bits (93), Expect = 0.020
Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 3/172 (1%)
Frame = +3
Query: 123 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 302
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 303 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 473
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 474 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 629
+F +LP+ + + ITA + + DR T FF
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFF 261
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 41.1 bits (92), Expect = 0.027
Identities = 43/238 (18%), Positives = 79/238 (33%)
Frame = +3
Query: 3 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 182
H D+G ++ A+L +P S + Y + T H
Sbjct: 29 HTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAI 88
Query: 183 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 362
L+P +LG+ D+A+PR++ F + +G +YPP
Sbjct: 89 PMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPP 147
Query: 363 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 542
L+S + G + D + + IS+ S D++P++ +T
Sbjct: 148 LASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVT 207
Query: 543 AFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
A +L +R FF + ++++ F YI+ LP
Sbjct: 208 ATMILTGFPPLILGSILLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLP 265
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 37.9 bits (84), Expect = 0.25
Identities = 34/168 (20%), Positives = 62/168 (36%)
Frame = +3
Query: 213 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 392
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 393 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 572
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 573 XAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
A +L +R + FF + P + ++++ F YI+ LP
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLP 334
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 37.9 bits (84), Expect = 0.25
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 87 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 260
EL +P S GD Y +VTAH N L+P +G+ D+A+PR+
Sbjct: 88 ELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRL 147
Query: 261 NNIRF 275
N+I F
Sbjct: 148 NSIGF 152
Score = 32.7 bits (71), Expect = 9.4
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
Frame = +3
Query: 342 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 512
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 513 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS 692
P ++ +T A+ ++ DR+ T+FF + P ++++ F
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 693 *SYILILP 716
Y+LI+P
Sbjct: 403 EVYVLIIP 410
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 37.5 bits (83), Expect = 0.33
Identities = 42/203 (20%), Positives = 69/203 (33%)
Frame = +3
Query: 108 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 287
L+G D YN I T H L+P +L A D+ FPR++
Sbjct: 75 LVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYI 132
Query: 288 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 467
+ G +YPPL+ G + D + + IS+
Sbjct: 133 VGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIV 192
Query: 468 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFGSCWRR 647
S ++P+F A+ I A A +L +R+ FF +
Sbjct: 193 GTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATMLLEIERSFGWPFFTAERGG 252
Query: 648 RPQFYINIYFDFWTS*SYILILP 716
P + ++++ F YI+ LP
Sbjct: 253 DPLLWQHLFWFFGHPEVYIIFLP 275
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 37.1 bits (82), Expect = 0.44
Identities = 35/170 (20%), Positives = 62/170 (36%)
Frame = +3
Query: 207 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 386
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 387 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 566
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 567 XXXAGAITILLTDRNLNTSFFGSCWRRRPQFYINIYFDFWTS*SYILILP 716
A+ +L DR L T FF + Y N+++ + Y ++LP
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLP 312
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 37.1 bits (82), Expect = 0.44
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 387 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 566
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 567 XXXAGAITILLTDRNLNT 620
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 35.1 bits (77), Expect = 1.8
Identities = 41/184 (22%), Positives = 67/184 (36%), Gaps = 5/184 (2%)
Frame = +3
Query: 93 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 272
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 273 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 437
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 438 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 617
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 618 TSFF 629
TSFF
Sbjct: 254 TSFF 257
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 35.1 bits (77), Expect = 1.8
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 504 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 629
DQ+ LF ++ IT AG IT+LL+DRN N FF
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFF 53
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 34.7 bits (76), Expect = 2.3
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +1
Query: 625 FLDPAGGGDPNFISTFILIFGHPEV 699
F DPAGGGD FGHPEV
Sbjct: 196 FFDPAGGGDXILFQHLFXFFGHPEV 220
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 33.1 bits (72), Expect = 7.1
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +1
Query: 625 FLDPAGGGDPNFISTFILIFGHPEVIF*F 711
F DP GGDP IFGHPEV F
Sbjct: 261 FFDPERGGDPLLWQHLFWIFGHPEVYIIF 289
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 9.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 607 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 485
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
chain 2 - Sepia officinalis (Common cuttlefish)
Length = 375
Score = 32.7 bits (71), Expect = 9.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 11 YWNIIFYFWYLIRNNWNIFKTFNS 82
YWNI+F+FWYLI ++ K NS
Sbjct: 348 YWNIMFHFWYLISFISHLAKINNS 371
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,426,930
Number of Sequences: 1657284
Number of extensions: 9468991
Number of successful extensions: 22858
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 21021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22525
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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