Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31018
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.080
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 31 0.56
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 31 0.98
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3) 30 1.3
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 29 4.0
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 28 5.2
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06) 28 6.9
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42) 27 9.1
>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 34.3 bits (75), Expect = 0.080
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 432 IEEKRQRLEEAEKKRQAMLQAMKDA 506
+EE+R+RLE EK+RQA QAM++A
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQEA 343
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +3
Query: 432 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 599
+EE+R+R EEAEKKR+ + ++ + + KK E L QLER K +++
Sbjct: 252 MEEERKRKEEAEKKREEEERKRREEEEAAQKW---KKEEL--LRQQQLEREKEEQE 302
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 435 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSEN 551
EE+RQ+ EEA K+R+ L A K++SK+ +++S N
Sbjct: 1344 EERRQKREEARKRREEKL-AKKESSKSSNKRKSKERSGN 1381
>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2391
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 485 APGHE--RCQQDRTQLHHPKEERKLRFEQ 565
APGH+ RC QD +L+ K ERK R EQ
Sbjct: 1105 APGHQPLRCLQDVEELYLSKVERKDRLEQ 1133
>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
Length = 1168
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +3
Query: 429 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFT 530
++EEK++RL+ E+ + ++ +A K+ASK+ + T
Sbjct: 427 EVEEKKRRLQRYERLQSSLNEAYKEASKSSVDGT 460
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 429 DIEEKRQRLEEAEKKRQAMLQAMKD 503
D+EEK + LEEA+ + +A+ MKD
Sbjct: 522 DLEEKAKELEEAKSENEAISGKMKD 546
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +3
Query: 435 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 599
EE+R++ EEAE++R+ + K + +QK+ + +R + ++Q
Sbjct: 636 EERRRQQEEAERQRREQEEVFKQQEQQRQQLELQKRQQEQQRQQELQKRQQEEKQ 690
>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 165 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 284
PA ++EGEG+P+ +R+ Q + ++Q K + +K ++
Sbjct: 56 PANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKS 95
>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
Length = 337
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 366 RGAFLLRHEKPCAWPASL*GV 304
RGA L R+E PC W A L G+
Sbjct: 69 RGAALQRNEPPCMWIAILNGI 89
>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +3
Query: 435 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 599
EEKR EEA K+++++ + + + K T +K+ E ++ N+ ++
Sbjct: 459 EEKRTESEEAPKRKKSLKRRLSFSRKNKAKKTEEKQDEEGEAREGTMDDNEVSQK 513
>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
Length = 1078
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 435 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNA 569
EE+RQ+ EEA K+R+ L + T + ++K G S A
Sbjct: 537 EERRQKREEARKRREEKLAKKGPTTSTSSSRKRRRKFNRNGRSAA 581
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,348
Number of Sequences: 59808
Number of extensions: 218363
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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