Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31018
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23930.1 68416.m03006 expressed protein                             32   0.35 
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    29   1.9  
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR...    29   3.2  
At3g43160.1 68416.m04554 expressed protein merozoite surface pro...    28   5.7  
At5g25070.1 68418.m02971 expressed protein                             27   7.5  
At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family...    27   7.5  
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    27   9.9  
At3g61350.1 68416.m06865 SKP1 interacting partner 4 (SKIP4) almo...    27   9.9  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    27   9.9  
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    27   9.9  
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    27   9.9  

>At3g23930.1 68416.m03006 expressed protein
          Length = 224

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 KQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQR 281
           K +  G    IK +D++   +  QLKE   EWRK+R
Sbjct: 21  KDQSRGRRHLIKERDEREKVMFLQLKEAEREWRKER 56


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 171 PKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEW 269
           PK+E EG+ E +  + +K     +++KE  +EW
Sbjct: 232 PKKENEGEVEEVDEEKEKDGKKKKKIKEVSHEW 264


>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1038

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +3

Query: 429 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE 578
           D  EKRQ L EAE+ R  +       S  G +F + K SE F +S    E
Sbjct: 502 DEPEKRQFLVEAEEIRDVLANETGTGSVLGISFDMSKVSE-FSISGRAFE 550


>At3g43160.1 68416.m04554 expressed protein merozoite surface
           protein 2 (MSP-2), EMBL:PFU72951, Plasmodium falciparum
          Length = 295

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 202 SSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSR 324
           +S+ +TRSGR +++    +ST   NS  R   SS   K  R
Sbjct: 103 NSTTRTRSGRGFIDYVLESSTGTENSSTRTAESSTRTKNGR 143


>At5g25070.1 68418.m02971 expressed protein
          Length = 736

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 438 EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLGRGE 614
           EKR    EAEKK  A  +  K+A +       + KS N      Q+E  K   +L + E
Sbjct: 565 EKRMPELEAEKKVAASTRNFKEAGR----IAAEAKSLNLEKDKTQMETGKANAELEKAE 619


>At1g48280.1 68414.m05393 hydroxyproline-rich glycoprotein family
           protein
          Length = 558

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 435 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK 593
           +EKR+R+EE E+K       +KD      N  ++ + E    SN +LE N  K
Sbjct: 112 DEKRKRMEELEEKLVVNESLIKDLQLQVLN--LKTELEEARNSNVELELNNRK 162


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 168 APKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWR 272
           +PK   E +PE  K  D+K    +E   E+I+ W+
Sbjct: 182 SPKDSDESEPEVEKVGDKKSDPKEEVPVEWISLWK 216


>At3g61350.1 68416.m06865 SKP1 interacting partner 4 (SKIP4) almost
           idential to SKP1 interacting partner 4 GI:10716953 from
           [Arabidopsis thaliana], 42 aa extension at N-terminal;
           contains Pfam profiles PF01344: Kelch motif, PF00646:
           F-box domain
          Length = 358

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 117 IPPRQTCWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 4
           +PP  T   +  C T   + ++   L L P A+R W++
Sbjct: 154 VPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWDI 191


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 438 EKRQRLEE-AEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLGRGE 614
           E+R++ EE A K+ +A  +  ++A +     T +KK E       + ER + +E+  R E
Sbjct: 444 ERRRKEEEEARKREEAKRREEEEAKRREEEETERKKREEEEARKREEERKREEEEAKRRE 503


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
            ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 432  IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNA-QLERNKTKEQ 599
            ++ K++      KK++    + K  +KTG +   +KK+ +  +S   +++RN T E+
Sbjct: 898  VDVKQETGSPDTKKKEGASSSSKKDTKTGEDKKAEKKNNSETMSEGKKIDRNNTDEK 954


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
            myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
            thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 432  IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKK 542
            +E+K+++LEE EKK Q + +++    +   N   + K
Sbjct: 1018 LEDKKKKLEETEKKGQQLQESLTRMEEKCSNLESENK 1054


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,524,701
Number of Sequences: 28952
Number of extensions: 147171
Number of successful extensions: 555
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)