Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31016
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 160 1e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 75 7e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 74 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 7e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 56 5e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 45 9e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 45 9e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 1e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.003
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.9
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 5.7
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 7.5
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 7.5
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.5
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 160 bits (389), Expect = 1e-40
Identities = 72/80 (90%), Positives = 78/80 (97%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQM 355
Query: 198 WISKEEYDESGPGIVHRKCF 257
WISK+EYDESGPGIV+RKCF
Sbjct: 356 WISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 74.9 bits (176), Expect = 7e-15
Identities = 34/81 (41%), Positives = 56/81 (69%)
Frame = +3
Query: 15 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 194
+N V+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF++
Sbjct: 300 SNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRR 359
Query: 195 MWISKEEYDESGPGIVHRKCF 257
+ I+ EEY ++ ++ R+ F
Sbjct: 360 LLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 73.7 bits (173), Expect = 2e-14
Identities = 35/85 (41%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLSTF 188
N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF
Sbjct: 349 NVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTF 407
Query: 189 QQMWISKEEYDESGP---GIVHRKC 254
Q+WIS++EY+E G ++ ++C
Sbjct: 408 HQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.7 bits (168), Expect = 7e-14
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYSVWIGGSILASLSTFQ 191
N V++GGT++ PG+++R+Q E+ LA S I + +VW GGSILASL FQ
Sbjct: 346 NIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQ 405
Query: 192 QMWISKEEYDESG 230
+W+SK+EYDE G
Sbjct: 406 HLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 55.6 bits (128), Expect = 5e-09
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Frame = +3
Query: 24 VMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSIL 170
V+SGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 171 AS-LSTFQQMWISKEEYDESG 230
A ++ MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 44.8 bits (101), Expect = 9e-06
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Frame = +3
Query: 6 GTRANTVMSGGTTMYPGIADRMQKEITALAPSTIK--------------IKIIAPPERKY 143
G N V+SGG+T++ +R+Q+++ + I + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 144 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 248
+VW GGS+LA F +K +Y+E G I R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 44.8 bits (101), Expect = 9e-06
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +3
Query: 15 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 194
+N +++GG PG+ R+++E+T++ P I + W G S + F+
Sbjct: 636 SNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKA 695
Query: 195 MWISKEEYDESGP 233
+++EEY E GP
Sbjct: 696 AKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 44.4 bits (100), Expect = 1e-05
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 322 NVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNAN 380
Query: 198 WISKEEYDESGPGIVHRK 251
I++ EY E G I+ RK
Sbjct: 381 KITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +3
Query: 15 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASLST 185
++ ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 531 SSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRI 590
Query: 186 FQQMWISKEEYDESGPGIVHRK 251
++WI ++ G ++ K
Sbjct: 591 VSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 150 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 251
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 75 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 185
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 313 ELGRAQHHTAPGSRGRAA*KHLRWT 239
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 6 GTRANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 134
G+ A +V +GG+ +PGI + I+A+ P ++ + I P+
Sbjct: 407 GSTAYSVAAGGSLCHPGIPAIL---ISAICPHSLSFRPIILPD 446
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 101 DHQDQDHRSPREEVLRMDRWIHPG 172
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 7.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 304 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 471
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 142 YFLSGGAMILILMVEGARAVISFCILSAIPGY 47
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,089
Number of Sequences: 5004
Number of extensions: 36544
Number of successful extensions: 93
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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