Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31016
(559 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 155 2e-38
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 155 2e-38
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 155 2e-38
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 155 2e-38
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 154 3e-38
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 154 3e-38
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 150 7e-37
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 150 7e-37
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 139 1e-33
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 132 2e-31
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 120 5e-28
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 110 5e-25
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 86 2e-17
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 78 3e-15
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 64 8e-11
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 59 2e-09
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 48 3e-06
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 47 7e-06
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 40 9e-04
At5g43500.2 68418.m05318 expressed protein 30 0.91
At5g43500.1 68418.m05319 expressed protein 30 0.91
At3g24210.1 68416.m03038 ankyrin repeat family protein contains ... 27 6.4
At2g20300.1 68415.m02371 protein kinase family protein contains ... 27 6.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 6.4
At1g67710.1 68414.m07727 two-component responsive regulator fami... 27 6.4
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 27 6.4
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 27 8.5
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 27 8.5
At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family... 27 8.5
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family... 27 8.5
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 155 bits (376), Expect = 2e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGG+TM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 198 WISKEEYDESGPGIVHRKCF 257
WISK EYDESGP IVHRKCF
Sbjct: 358 WISKSEYDESGPSIVHRKCF 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 155 bits (376), Expect = 2e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 198 WISKEEYDESGPGIVHRKCF 257
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 155 bits (376), Expect = 2e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 198 WISKEEYDESGPGIVHRKCF 257
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 155 bits (376), Expect = 2e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+PGIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 198 WISKEEYDESGPGIVHRKCF 257
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 154 bits (374), Expect = 3e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+ GIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 198 WISKEEYDESGPGIVHRKCF 257
WISK EYDE+GPGIVHRKCF
Sbjct: 358 WISKAEYDEAGPGIVHRKCF 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 154 bits (374), Expect = 3e-38
Identities = 69/80 (86%), Positives = 76/80 (95%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+ GIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 198 WISKEEYDESGPGIVHRKCF 257
WISK EYDE+GPGIVHRKCF
Sbjct: 358 WISKAEYDEAGPGIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 150 bits (363), Expect = 7e-37
Identities = 67/80 (83%), Positives = 74/80 (92%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+ GI DRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 198 WISKEEYDESGPGIVHRKCF 257
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 150 bits (363), Expect = 7e-37
Identities = 67/80 (83%), Positives = 74/80 (92%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+ GI DRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQM
Sbjct: 298 NIVLSGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357
Query: 198 WISKEEYDESGPGIVHRKCF 257
WI+K EYDESGP IVHRKCF
Sbjct: 358 WIAKAEYDESGPSIVHRKCF 377
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 139 bits (336), Expect = 1e-33
Identities = 61/80 (76%), Positives = 70/80 (87%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+PGIADRM KEI ALAP ++KIK++APPERKYSVW+GGSILASLS+F M
Sbjct: 299 NIVLSGGTTMFPGIADRMNKEINALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPM 358
Query: 198 WISKEEYDESGPGIVHRKCF 257
WI+K EYDE G IVHRKCF
Sbjct: 359 WITKAEYDEQGGAIVHRKCF 378
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 132 bits (319), Expect = 2e-31
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+ GI +RM KEI ALA + ++IKI+APPERKYSVWIGGSILASLST++QM
Sbjct: 250 NIVLSGGTTMFRGIEERMTKEINALAAANMRIKIVAPPERKYSVWIGGSILASLSTYEQM 309
Query: 198 WISKEEYDESGPGIVHRKCF 257
WI+K EY+E+GP IVH KCF
Sbjct: 310 WITKAEYEENGPAIVHTKCF 329
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 120 bits (290), Expect = 5e-28
Identities = 52/79 (65%), Positives = 65/79 (82%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N +M+GGTTM GI +RM KE+ AL PS++K+K++ PPE + SVWIGGSILASLSTF QM
Sbjct: 287 NILMTGGTTMLHGIKERMTKELNALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQM 346
Query: 198 WISKEEYDESGPGIVHRKC 254
WI+K+EY+E G IVHRKC
Sbjct: 347 WITKDEYEEHGAAIVHRKC 365
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 110 bits (265), Expect = 5e-25
Identities = 51/64 (79%), Positives = 59/64 (92%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQM 197
N V+SGGTTM+ GIADRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQ+
Sbjct: 298 NIVLSGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQV 357
Query: 198 WISK 209
I +
Sbjct: 358 KIDQ 361
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/83 (43%), Positives = 59/83 (71%), Gaps = 3/83 (3%)
Frame = +3
Query: 15 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP---PERKYSVWIGGSILASLST 185
++ +++GGT+ + +R++K++ +P + ++K++A ER++SVWIGGSILASL +
Sbjct: 358 SSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGS 417
Query: 186 FQQMWISKEEYDESGPGIVHRKC 254
FQQMW SK EY+E G + RKC
Sbjct: 418 FQQMWFSKSEYEEHGASYIQRKC 440
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 78.2 bits (184), Expect = 3e-15
Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK------YSVWIGGSILASL 179
NTV+ GGTT G R QKE L S I+ ++ PPE YS W+GG+ILA +
Sbjct: 279 NTVLCGGTTSMTGFESRFQKEAN-LCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKV 337
Query: 180 STFQQMWISKEEYDESGPGIVHRKCF 257
Q ++K +YDE+GP +VHRKCF
Sbjct: 338 VFPQNQHVTKADYDETGPSVVHRKCF 363
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 63.7 bits (148), Expect = 8e-11
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +3
Query: 24 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 203
+++GG+T++P + +R++ E+ L P +KI + VW GGS+LAS F+ M +
Sbjct: 343 ILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCV 402
Query: 204 SKEEYDESGPGIVHRKCF 257
+K EY+E G R+ F
Sbjct: 403 TKAEYEELGSARCRRRFF 420
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Frame = +3
Query: 24 VMSGGTTMYPGIADRMQKEI------TALAPS-----TIKIKIIAPPERKYSVWIGGSIL 170
V+SGG+TMYPG+ R++KEI T L + ++++I PP RK+ V++GG++L
Sbjct: 299 VLSGGSTMYPGLPSRLEKEIQDRYLDTVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVL 358
Query: 171 AS-LSTFQQMWISKEEYDESG 230
A + + WI++E+Y E G
Sbjct: 359 AGIMKDAPEFWINREDYMEEG 379
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 48.4 bits (110), Expect = 3e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
Frame = +3
Query: 18 NTVMSGGTTMYPGIADRMQKEITALAPSTI----------------KIKIIAPPERKYSV 149
N V+SGG+TM+ R+Q+++ + + + ++ +++ P ++++V
Sbjct: 327 NIVLSGGSTMFKDFGRRLQRDLKKIVDARVLANNARTGGEITSQPVEVNVVSHPVQRFAV 386
Query: 150 WIGGSILASLSTFQQMWISKEEYDESGPGI 239
W GGS+L+S F +KEEY+E G I
Sbjct: 387 WFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 47.2 bits (107), Expect = 7e-06
Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Frame = +3
Query: 24 VMSGGTTMYPGIADRMQKEITALAPSTIK--IKIIAPPERKYSVWIGGSILASLSTFQQM 197
V++GG+ PG+++R+++E+ PS+I I++I PP + W G ++++LS F
Sbjct: 396 VLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFPGP 455
Query: 198 W-ISKEEY 218
W I+++++
Sbjct: 456 WCITRKQF 463
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +3
Query: 15 ANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQ 194
++ +M+GG ++ PG+ +R++ I + P I ++ + W G S A+ F
Sbjct: 639 SSILMTGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLNFLG 698
Query: 195 MWISKEEYDESG 230
+K +YDE G
Sbjct: 699 NAFTKMDYDEKG 710
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 30.3 bits (65), Expect = 0.91
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 33 GGTTMYPGIADRMQKEITALAPSTIKIKII----APPERKYSVWIGGSILASLSTFQQMW 200
GG + G+ +++ + P T I + + E ++ W GG+IL L ++ W
Sbjct: 490 GGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGREAW 549
Query: 201 ISKEEYDESG 230
I + ++ +G
Sbjct: 550 IERHQWMVNG 559
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 30.3 bits (65), Expect = 0.91
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 33 GGTTMYPGIADRMQKEITALAPSTIKIKII----APPERKYSVWIGGSILASLSTFQQMW 200
GG + G+ +++ + P T I + + E ++ W GG+IL L ++ W
Sbjct: 502 GGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGREAW 561
Query: 201 ISKEEYDESG 230
I + ++ +G
Sbjct: 562 IERHQWMVNG 571
>At3g24210.1 68416.m03038 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 607
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 68 DAEGDHRPRALDHQDQDHRSPREEVLRMDRWIHPGFPV 181
D E +P+AL H S ++ LR W+ P FP+
Sbjct: 423 DNEHYRKPKALVSDKTRHESEYKKGLRPVLWLSPNFPL 460
>At2g20300.1 68415.m02371 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 744
Score = 27.5 bits (58), Expect = 6.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 2 IRHEGQHRHVRWY 40
+RH+G HRH RW+
Sbjct: 71 LRHKGHHRHRRWH 83
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 5 RHEGQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREE 139
+HE H H +HH ++ ++ +H DH+ Q H EE
Sbjct: 590 KHEEHHEHDH-HHHSHSHKHEECNHNH-----DHEHQSHSHNHEE 628
>At1g67710.1 68414.m07727 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver
domain; contains similarity to response regulator
proteins from [Arabidopsis thaliana]
Length = 521
Score = 27.5 bits (58), Expect = 6.4
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +3
Query: 12 RANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQ 191
R++ V SGG ++ + K + + + S + +I PP+ K IG S S F
Sbjct: 286 RSSYVFSGGNSLIQKATEIDPKPLASASLSDLNTDVIMPPKTK-KTRIGFDPPISSSAFD 344
Query: 192 QM--WISKEEYDESGPGIVHRKCF*AARP 272
+ W E ES P +++ F +P
Sbjct: 345 SLLPWNDVPEVLESKP-VLYENSFLQQQP 372
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 14 GQHRHVRWYHHVPRYRRQDAEGDHRPRALD 103
GQH H+R H PRYR + +P +D
Sbjct: 1403 GQHGHMRTNKHCPRYRENT---ESQPEGID 1429
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 RHEGQHRHVRWYHHVPRYRRQDAEGDHRPRALDH-QDQDH 121
R +HRH + Y D EG+HR R+ H +D D+
Sbjct: 691 RSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKHSKDVDY 730
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 RHEGQHRHVRWYHHVPRYRRQDAEGDHRPRALDH-QDQDH 121
R +HRH + Y D EG+HR R+ H +D D+
Sbjct: 691 RSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKHSKDVDY 730
>At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family
protein similar to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 515
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 24 VMSGGTTMYPGIADRMQKEITALAPSTIKIKII 122
+ G + +Y G+ D QK I + T+ KI+
Sbjct: 209 INGGASWLYQGVVDAFQKMIISTVEKTVSTKIV 241
>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
protein similar to SP|P17213 Bactericidal
permeability-increasing protein precursor (BPI) {Homo
sapiens}; contains Pfam profile PF02886: LBP / BPI /
CETP family, C-terminal domain
Length = 722
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 24 VMSGGTTMYPGIADRMQKEITALAPSTIKIKII 122
+ G + +Y G+ D QK I + T+ KI+
Sbjct: 416 INGGASWLYQGVVDAFQKMIISTVEKTVSTKIV 448
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,966,078
Number of Sequences: 28952
Number of extensions: 209998
Number of successful extensions: 570
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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