Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31013
(655 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 353 2e-96
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 221 2e-56
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 217 3e-55
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 195 9e-49
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 194 2e-48
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 181 2e-44
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 181 2e-44
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 167 2e-40
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 145 7e-34
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 128 9e-29
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 122 8e-27
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 111 2e-23
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 110 3e-23
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 109 6e-23
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 109 6e-23
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 109 8e-23
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 105 9e-22
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 103 3e-21
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 103 5e-21
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 102 7e-21
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 99 8e-20
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 96 7e-19
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 95 1e-18
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 90 5e-17
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 88 2e-16
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 88 2e-16
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 85 1e-15
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 85 2e-15
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 82 1e-14
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 79 1e-13
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 77 5e-13
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 1e-10
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 66 9e-10
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 9e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 65 1e-09
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 63 5e-09
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 59 8e-08
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 56 1e-06
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 54 3e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 52 9e-06
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 50 5e-05
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 50 6e-05
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 48 2e-04
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 48 2e-04
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 46 6e-04
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 46 8e-04
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 46 0.001
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 44 0.003
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 44 0.004
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 42 0.017
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 42 0.017
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.039
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 40 0.069
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 39 0.091
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 39 0.091
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 39 0.091
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 38 0.16
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 38 0.28
UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 36 0.64
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.64
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 36 0.64
UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmic... 36 0.64
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 36 0.64
UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613; ... 36 1.1
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 35 2.0
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 2.3
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 2.6
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 34 3.4
UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=... 33 6.0
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 6.0
UniRef50_UPI0000DA292B Cluster: PREDICTED: similar to Calpain sm... 33 7.9
UniRef50_Q9AA22 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
UniRef50_O84054 Cluster: Putative uncharacterized protein; n=3; ... 33 7.9
UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin... 33 7.9
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 7.9
UniRef50_UPI00015B59E8 Cluster: PREDICTED: hypothetical protein;... 29 9.1
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 353 bits (868), Expect = 2e-96
Identities = 170/197 (86%), Positives = 180/197 (91%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
LAEDGYSGVEVRVTP R+EIII+ATRTQ+VLGEKGRRIRELT+VVQKRF PE SVELYA
Sbjct: 29 LAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYA 88
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
EKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEVVVSGKLRGQRAK
Sbjct: 89 EKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAK 148
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 114
SMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKVKIMLPWD GK GPKKP PDH+
Sbjct: 149 SMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHV 208
Query: 113 LVTEPKDEPVPLEPTSE 63
+ EPKDE +P P SE
Sbjct: 209 SIVEPKDEILPTTPISE 225
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 221 bits (539), Expect = 2e-56
Identities = 111/200 (55%), Positives = 142/200 (71%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
LAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GRRI ELTS++ KRF + + + +YA
Sbjct: 30 LAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGRRIHELTSLIVKRFKLSPEGIAIYA 89
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
E+V RGL A QAE+L+ KL+ GL +RRA YGVLRF M +GA+G EVV+SGKLR RAK
Sbjct: 90 ERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLRFAMGAGAKGVEVVISGKLRAARAK 149
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 114
S K+ DG MIHSG P D+++ A RHVL+RQGVLGIKVKIM + GP + PD +
Sbjct: 150 SQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGIKVKIMKD-PAANRFGP-RALPDAV 207
Query: 113 LVTEPKDEPVPLEPTSEVRS 54
+ E KDE + P V+S
Sbjct: 208 KIAEAKDEDEVI-PAPTVKS 226
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 217 bits (529), Expect = 3e-55
Identities = 107/186 (57%), Positives = 138/186 (74%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
LA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGRRIRELT+ +Q+RFN E ++L+A
Sbjct: 80 LADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGRRIRELTACLQQRFNYKEGKLQLFA 139
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
E+V RGL A+AQAESLR+KL+ L VRRA G++R++MESGA+GCEV + GK++GQRAK
Sbjct: 140 ERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVMESGAKGCEVTIGGKIKGQRAK 199
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 114
SM F DG MI SG +V+TATRH LR G +G+ VKIM P Q + PD I
Sbjct: 200 SMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGVNVKIMRP---QSMIEEDEVLPDVI 256
Query: 113 LVTEPK 96
V EPK
Sbjct: 257 TVIEPK 262
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 195 bits (475), Expect = 9e-49
Identities = 89/187 (47%), Positives = 128/187 (68%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L ++GY G EVR TP R+EIII A T+ + GRR++E+ ++QKR+ + E S+E++
Sbjct: 30 LTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRRLQEVRMMIQKRWRLKEDSLEIFI 89
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
+++ +GL A+ Q ESLRYKLI + RRA Y ++RF+M++GARGCEV +SGKLRG RA
Sbjct: 90 DRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGARGCEVAISGKLRGARAS 149
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 114
+ K+ +G M+ SGD +V A H+ ++Q +GI+V IML D G +GPK+ QPD I
Sbjct: 150 TSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQATIGIRVLIMLAQDPSGISGPKESQPDVI 209
Query: 113 LVTEPKD 93
V E KD
Sbjct: 210 KVHEAKD 216
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 194 bits (473), Expect = 2e-48
Identities = 86/188 (45%), Positives = 134/188 (71%), Gaps = 2/188 (1%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L + GY+G+EVR TP ++EI I AT+ Q V+G +G++ +ELT +QKRF + ++++A
Sbjct: 42 LQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFGYSDDQIQIWA 101
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
E + +GLCA AQ E++ YKL+ + VR A +++ +++ GA+GCE+++SGKL+ QRAK
Sbjct: 102 EPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIIISGKLKQQRAK 161
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQ--GKNGPKKPQPD 120
+MKF G MI +G P NDY++ A RHV +QG++G+KVKIMLP++ K G K P PD
Sbjct: 162 TMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPD 221
Query: 119 HILVTEPK 96
++++ PK
Sbjct: 222 NVIIHPPK 229
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 181 bits (440), Expect = 2e-44
Identities = 105/185 (56%), Positives = 121/185 (65%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L E+GYSG EVRVTP+ +EIII AT+T +VLGEKG++I+ELTSVVQKRF E SVEL A
Sbjct: 29 LVENGYSGDEVRVTPMCTEIIIRATQTHNVLGEKGKKIKELTSVVQKRFEFLENSVELCA 88
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
EKV RG AIAQAESLRYKL+GGLA+ L QRAK
Sbjct: 89 EKVNNRGFYAIAQAESLRYKLLGGLAM--------------------------LCAQRAK 122
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 114
SMKF DG +I SG P DY++ A RHV LRQGVLGIKVKIM WD +GK P PD +
Sbjct: 123 SMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGVLGIKVKIMFNWDPKGKQSLTTPLPDLV 181
Query: 113 LVTEP 99
+ P
Sbjct: 182 TIQTP 186
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 181 bits (440), Expect = 2e-44
Identities = 82/187 (43%), Positives = 124/187 (66%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L +G+S +E+R+ +II+ + +GEK R+R+ + +R +P++SVE+
Sbjct: 40 LVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQFQHLAAQRLEVPDESVEIVV 99
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
EKV +GLCA+ QA +R K++GG+ RRA L+ + A+GC+++VSGKL+GQRAK
Sbjct: 100 EKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGKLKGQRAK 159
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 114
S+KF DG++IHSGD DY+NT V +QGV+GI+V+IMLP+D +G GP P PD I
Sbjct: 160 SVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRI 219
Query: 113 LVTEPKD 93
+ EP +
Sbjct: 220 TILEPSE 226
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 167 bits (407), Expect = 2e-40
Identities = 91/154 (59%), Positives = 108/154 (70%)
Frame = -3
Query: 599 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 420
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 419 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 240
+KL+GGL VRRA YGVL F+MESG +GCEV+ +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEVI----------------GWYIISSGQPVKD 204
Query: 239 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 138
Y+N+ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 205 YINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 145 bits (352), Expect = 7e-34
Identities = 66/108 (61%), Positives = 84/108 (77%)
Frame = -3
Query: 395 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 216
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 215 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 72
LLRQG +G++VKIML D +G++GP P PD +++ PK++ +P
Sbjct: 90 ALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 128 bits (310), Expect = 9e-29
Identities = 67/163 (41%), Positives = 98/163 (60%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L GY G++++ TP+ +++II A V+G GRRIRELT +++K+F + +E+
Sbjct: 25 LRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV-- 82
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
E++ L A QA L L G+ RRA Y LR IM +GARG E+ +SGKL G+RAK
Sbjct: 83 EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAK 142
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
S++F G + G+P V+ LL+ GV+G+KV IM P
Sbjct: 143 SIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIMPP 185
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 122 bits (294), Expect = 8e-27
Identities = 59/163 (36%), Positives = 98/163 (60%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L + GY+ + T +II + V+G+ R+ ++ ++ RF ++ ++
Sbjct: 35 LVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKIEYLLAGRFMCDPKNFNIWV 94
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
+K+ RGL A ++LR KL + +RRA Y ++R M +GA GCEV+V+GKLR QRA+
Sbjct: 95 DKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAGCEVIVAGKLRAQRAR 154
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
+ KF +G +I +G P ++ ATRH+ +RQGV+G+KV+I P
Sbjct: 155 ANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIYNP 197
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 111 bits (266), Expect = 2e-23
Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 1/195 (0%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L GY G+++ TP+ +++ I A + V+G+ G+++R+LT + ++I VE+
Sbjct: 25 LKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV-- 82
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
++V A AE L L G R+A +R IMESGA GCEV+V+GKL G R++
Sbjct: 83 QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSR 142
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 114
+ KF +G + H G+P V + + G +G++VKI+ P + P +
Sbjct: 143 TQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVKIVPP-------DARLPDAFDV 195
Query: 113 LVTEPKDEPV-PLEP 72
L EPK P P+EP
Sbjct: 196 LEPEPKKAPAEPIEP 210
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 110 bits (264), Expect = 3e-23
Identities = 59/163 (36%), Positives = 96/163 (58%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR+LT V ++++ ++ A
Sbjct: 25 LSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--A 82
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
++V L A A L + G R+A + LR +M +GA GCEVV+SGKL G R++
Sbjct: 83 QEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSR 142
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
KFVDG + HSG+P + V+ + + G LG KV+I+ P
Sbjct: 143 VEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRIIQP 185
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 109 bits (262), Expect = 6e-23
Identities = 64/197 (32%), Positives = 103/197 (52%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L GY G++V+VTP+ + +++ A R V+G G+ +R +T ++ +F++ VE+
Sbjct: 24 LERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV-- 81
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
++V L A + L G+ RR Y +R IM +GA+G EV +SGK+RG R+
Sbjct: 82 KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSA 141
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 114
+ KF DG + G+P +V V L+ GVLG+ V+IM P PD +
Sbjct: 142 TAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM---------PPDVVLPDKV 192
Query: 113 LVTEPKDEPVPLEPTSE 63
+ +P+ P E SE
Sbjct: 193 EIEDPRVTETPAEEASE 209
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 109 bits (262), Expect = 6e-23
Identities = 53/163 (32%), Positives = 92/163 (56%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L GYS ++ + TPI + I + A + V+G KG+ ++ELT + +++ +E+
Sbjct: 24 LVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVKNPQIEV-- 81
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
++V L + L G+ R+ + +R +M SGA+G ++VSGKL G+R++
Sbjct: 82 KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSR 141
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
+ KF+DG M H G+P VN + + L+ G++G+ VKIM P
Sbjct: 142 TEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIMRP 184
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 109 bits (261), Expect = 8e-23
Identities = 68/193 (35%), Positives = 109/193 (56%), Gaps = 3/193 (1%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
GYS VE++ TP+ + +II A R+ +++G +G+ I+++T V+++ F IP V + KV
Sbjct: 34 GYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVE 91
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 282
L A A L L G RRA Y LR IM +GA G +V VSGKLRG+RA+ K+
Sbjct: 92 EPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKY 151
Query: 281 VDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP---KKPQPDHIL 111
+ G + SG+ + A HVLL+ GV G++V I +++ + K P+ + +
Sbjct: 152 IAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVIISKKSEEERPDDEVRIKSPEEVNEI 211
Query: 110 VTEPKDEPVPLEP 72
V + ++E +P
Sbjct: 212 VQKIREEMQQTQP 224
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 105 bits (252), Expect = 9e-22
Identities = 55/163 (33%), Positives = 99/163 (60%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L GY G++V TP+ ++I++ A + V+G+ G+ IR++T+ ++ RFN+ + V++
Sbjct: 25 LGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV-- 82
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
++V L A A+ L L G R+A + + IMESGA G E+V+SGK+ G R++
Sbjct: 83 QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSR 142
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
KF G + H+G+P + V++ +++ G +G++VKI+ P
Sbjct: 143 VEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKIIPP 185
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 103 bits (248), Expect = 3e-21
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = -3
Query: 305 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQ 126
QRAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIKVKIML WD GK GPK P
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPL 61
Query: 125 PDHILVTEPK 96
PD++++ PK
Sbjct: 62 PDNVVIHMPK 71
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 103 bits (246), Expect = 5e-21
Identities = 58/163 (35%), Positives = 90/163 (55%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L Y + TPI +++I+ A V+G KG I+ + V+++ F I +++
Sbjct: 26 LVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV- 84
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
+V + L A A + L+ G+ RRA L IM +GARG E+V+SGKL QR +
Sbjct: 85 -EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHR 143
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
+ KF G + SG+P + V+ A HVLL+ G+ G+KV+IM P
Sbjct: 144 TEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRIMKP 186
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 102 bits (245), Expect = 7e-21
Identities = 59/159 (37%), Positives = 89/159 (55%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G+ GV++ TP+ +++ + R V+G+ GRRI+ LT + K F I V + ++V
Sbjct: 29 GFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALTEKL-KDFGIENPQVSV--DEVE 85
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 282
A A L L G RRA Y L IME+GA+GCE+ +SGKL +RA++ KF
Sbjct: 86 KPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKF 145
Query: 281 VDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
V G ++H+GDP V + + GVLG+ V+I+ P
Sbjct: 146 VAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVRIIPP 184
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 99.1 bits (236), Expect = 8e-20
Identities = 54/163 (33%), Positives = 91/163 (55%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L GY G+ ++ P ++II R +G +GR IR + VQ+RF + + V +
Sbjct: 32 LGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLLGR-VSIEV 90
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
+++ + L A L L G+ RRA YG LR IM +GA+G +++SGKL G RA+
Sbjct: 91 KELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARAR 150
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
+ KF++G + + G+P ++Y+ + + G +G+ V+IM P
Sbjct: 151 TEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIMPP 193
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 95.9 bits (228), Expect = 7e-19
Identities = 59/180 (32%), Positives = 92/180 (51%), Gaps = 2/180 (1%)
Frame = -3
Query: 638 YSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVAT 459
Y+GVEV TPI + +II A R ++G GR I++L + +K F + + + V
Sbjct: 31 YAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVEN 88
Query: 458 RGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 279
L A A L L G RRA + +R IM +GA G E+++SGKL +RA+ K
Sbjct: 89 PELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLK 148
Query: 278 DGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK-NGPKKPQ-PDHILVT 105
+G++ SG ++ A +L+ G+ G++V I P + K N + P P + VT
Sbjct: 149 EGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITKPLKIEDKINLKESPSVPQEVSVT 208
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 95.1 bits (226), Expect = 1e-18
Identities = 57/158 (36%), Positives = 85/158 (53%)
Frame = -3
Query: 638 YSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVAT 459
Y+GVE+ TPI + +II A R ++G+ G+ I++L V++K F + + + A +
Sbjct: 31 YAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--N 88
Query: 458 RGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 279
L A A L L G RRA + +R IM SGA G EV+VSGKL +RAK K
Sbjct: 89 PELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLK 148
Query: 278 DGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
+G + SG ++ A +L+ GV G++V I P
Sbjct: 149 EGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVITKP 186
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 89.8 bits (213), Expect = 5e-17
Identities = 48/161 (29%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELY- 477
L++ GY E+ TP+ + I+I A R ++G KG ++E+++++ + + +++
Sbjct: 32 LSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVID 91
Query: 476 AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRA 297
K+ + A + + G+ RR + +R +ME+GA+G E+VVSGKL +RA
Sbjct: 92 ISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERA 151
Query: 296 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 174
+ K G + G + V A HVLL+ G+ GI+V+I
Sbjct: 152 RFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 88.2 bits (209), Expect = 2e-16
Identities = 52/159 (32%), Positives = 86/159 (54%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
GY+G+E+ TP ++I A ++G G IR+L +++Q F + ++V + V
Sbjct: 32 GYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVP 89
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 282
L A A + L + RR +LR +ME+GA G E+++SGKLR +RA+ K
Sbjct: 90 DPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKL 149
Query: 281 VDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
G + +GD + V+ A LL++GV G++V I+ P
Sbjct: 150 KAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIVRP 188
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 87.8 bits (208), Expect = 2e-16
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = -3
Query: 362 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 183
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLLRQGVLG K
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 182 VKIMLPWDQ 156
+ P Q
Sbjct: 140 CRSCFPGTQ 148
Score = 53.2 bits (122), Expect = 5e-06
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 552
LAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 29 LAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 85.0 bits (201), Expect = 1e-15
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 1/191 (0%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
+ + G+SGVEV P ++I + TR V+G KG IRELT ++K F++ V++
Sbjct: 25 IKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV-- 82
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVVSGKLRGQRA 297
+++ T L + + G A RRA ++ IME A G ++ +SGKLRG R+
Sbjct: 83 KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRS 142
Query: 296 KSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDH 117
K G++ +G + V HV G++GI+++I D+ K+ K + D
Sbjct: 143 AFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRIARR-DKFRKDFEMKAEKDV 201
Query: 116 ILVTEPKDEPV 84
+ +P+ V
Sbjct: 202 VPAPKPEHHDV 212
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 84.6 bits (200), Expect = 2e-15
Identities = 46/189 (24%), Positives = 100/189 (52%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L + Y ++ T + + I+I+A + ++G KG++++ L +++ +FN+ +++
Sbjct: 23 LTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKALADILKSKFNLDNVVIDVIQ 82
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAK 294
E +A + + G+ RRA LR + E+ +G EV++SGKL +R++
Sbjct: 83 EPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQEANVQGAEVIISGKLTTERSR 140
Query: 293 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 114
K+ G++I +G + V A VLL+ G+ ++V++ LP D + + + P+ +
Sbjct: 141 FEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVRVRV-LPPDAKLSDRFEVKSPEEV 199
Query: 113 LVTEPKDEP 87
V + +++P
Sbjct: 200 QVKQIENKP 208
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 81.8 bits (193), Expect = 1e-14
Identities = 44/159 (27%), Positives = 87/159 (54%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G+ + ++ TP + I + R V+G +G +++++T ++K++ I +E+ + V
Sbjct: 28 GFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETPQIEV--KDVK 85
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 282
L A+ + L G + R+A L +++GA+G + +SGK+ G+RA+ KF
Sbjct: 86 DPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKF 145
Query: 281 VDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
+ G + +SG+P + + T L+ G+LG+ VKI+ P
Sbjct: 146 IYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTVKILNP 184
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 78.6 bits (185), Expect = 1e-13
Identities = 45/161 (27%), Positives = 84/161 (52%)
Frame = +3
Query: 171 HDFDLDS*YSLSEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGT 350
H+ D D+ +LS +H+S +V+ ++ ++RVDHE++ L G+ ++Q +N T T
Sbjct: 82 HNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLST 141
Query: 351 RFHDETENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGS 530
H ++++T+ +++ +T +L FGL S + + + +ESL G
Sbjct: 142 SSHGKSQHTVGGSSHWQTVQQLGFQGFGLDSSGQTSLLDSLGVDDNSFRRQLESLDNQGG 201
Query: 531 ELTDSASFLSEHTLCPGGHNNDLRADGSDPHFHAGVAVLSQ 653
+L DS S S++TL G +N+L+ + GV + SQ
Sbjct: 202 QLVDSTSLFSQNTLGVGSLDNNLQLGWGLSDLNTGVTLFSQ 242
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 76.6 bits (180), Expect = 5e-13
Identities = 45/159 (28%), Positives = 80/159 (50%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G+ G+E TP +++ + A + V+G +G+ I EL ++ F + +E+ ++
Sbjct: 33 GFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHELQYRLKSDFKLENPRLEV--NEIE 90
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 282
L A A L L G RRA + + IM++GARGC +++SGK+ G R + KF
Sbjct: 91 EPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAGARGCLIILSGKISGPRHRVQKF 150
Query: 281 VDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
G + G+ +++ + + G +G V+IM P
Sbjct: 151 QQGHIKFCGETALQFMDEGFSTAVKKLGTVGCTVRIMRP 189
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 68.5 bits (160), Expect = 1e-10
Identities = 33/44 (75%), Positives = 38/44 (86%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 522
++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 17 ISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 65.7 bits (153), Expect = 9e-10
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Frame = -3
Query: 527 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 351
+++ F I +++ + + + + Q+ ++ + R + LRF++ S
Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171
Query: 350 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 171
G RGC + + G R +R K+ KF GL+ HSG ND++++ + ++ ++G LGI +KIM
Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGINIKIM 231
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 65.7 bits (153), Expect = 9e-10
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 519
+ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 140 ILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 65.3 bits (152), Expect = 1e-09
Identities = 32/44 (72%), Positives = 36/44 (81%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 522
+ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 407 ILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 41.9 bits (94), Expect = 0.013
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 561
+ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 282 IPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 63.3 bits (147), Expect = 5e-09
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 1/158 (0%)
Frame = -3
Query: 635 SGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 456
S V +R TPI + +II + R + + E R L +++ +F + + +E+ +
Sbjct: 33 SKVIIRQTPIVNRVIIYSARPKMISEE---RKAHLAKLLELKFGLEKPVIEVLP--IENP 87
Query: 455 GLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 279
L A AE L + + A RR L IM +GA G E+V++G+L GQR K+ +F
Sbjct: 88 NLDAHVIAERLAMGIERNIRAYRRLAQRYLETIMNAGAIGAEIVIAGRLSGQRGKTWRFK 147
Query: 278 DGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 165
G + +G ++ A L+ GV GI V I+ P
Sbjct: 148 AGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVTILKP 185
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 59.3 bits (137), Expect = 8e-08
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
LA G + +E+ + +II A + V+G+ G I+EL +++ + +V +
Sbjct: 47 LAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--VSAGTVAVNV 104
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRA 297
++ + A A + ++ A RRA + +MESGARG +V++SG+L G ++A
Sbjct: 105 AEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILSGRLGGAEQA 164
Query: 296 KSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 174
++ K ++G + +H+ DY R G+LGIKV +
Sbjct: 165 RTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILGIKVLV 203
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 55.6 bits (128), Expect = 1e-06
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Frame = -3
Query: 596 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 417
+++ + + ++LG+ G I +LT +QK E + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 416 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM-IHSGDPCN 243
KL R A +R M+SGA+G + VSG+L G A+S + +G M +H+
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEMKLHTLRQDV 186
Query: 242 DYVNTATRHVLLRQGVLGIKV 180
D+ R G +G+KV
Sbjct: 187 DFAMATAR---TTYGAIGVKV 204
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 54.0 bits (124), Expect = 3e-06
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Frame = -3
Query: 596 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 417
I I R ++G+ G+ + +L +++ I ++ V++ ++ L A AE++
Sbjct: 65 ITICTARPGMIIGKAGQEVDKLKEELKR---ITKKDVQINIYEIRKPELDAAIVAENIAR 121
Query: 416 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCN 243
+L G +A RRA + M GA G ++ VSG+L G + A+S F +G +H+
Sbjct: 122 QLEGKIAYRRAVKMAIASAMRMGAEGIKIQVSGRLNGAEMARSEMFKEGRTPLHTLRADI 181
Query: 242 DYVNTATRHVLLRQGVLGIKVKI 174
DY A L + G+LGIKV I
Sbjct: 182 DY---ALAEALTKVGLLGIKVWI 201
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 52.4 bits (120), Expect = 9e-06
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 516
+ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 239 IPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 50.0 bits (114), Expect = 5e-05
Identities = 40/162 (24%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
+A+ G + V + T R + I R V+G+ G+ + ++ ++K + ++ +++
Sbjct: 46 IAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---LTKKEIQINI 102
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRA 297
++ L A AE + +L ++ RRA + M GA G +++ SG+L G + A
Sbjct: 103 FEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTSGRLGGAEMA 162
Query: 296 KSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 174
+S ++ +G + +H+ DY A L G +G+KV I
Sbjct: 163 RSEQYKEGRIPLHTFRADIDY---ALAEALTTYGKIGVKVWI 201
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 49.6 bits (113), Expect = 6e-05
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = -3
Query: 629 VEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGL 450
VE+ P R +++ R V+G KG I ++ + VQKR N + V++ +++ L
Sbjct: 57 VEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMEL 113
Query: 449 CAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 273
A A+++ +L ++ R+ M+SGA+G ++ VSG+L G + +++ + +G
Sbjct: 114 NAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGGAEMSRTEEIKEG 173
Query: 272 -LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 180
+H+ DY A H G +G+KV
Sbjct: 174 RTPLHTLRADIDY-GFAEAHT--TYGSIGVKV 202
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 48.0 bits (109), Expect = 2e-04
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 3/185 (1%)
Frame = -3
Query: 602 SEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESL 423
+ I I + R V+G+KG I L + ++ +P V + E+V + A A+S+
Sbjct: 64 ARITIFSARPGVVIGKKGEDIENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSI 120
Query: 422 RYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDP 249
+L + RRA ++ M GA G +++ SG+L G + A+ + +G + +H+
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRA 180
Query: 248 CNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEP-VPLEP 72
DY T GV+G+KV W +G + P L P DE P P
Sbjct: 181 DIDY---GTSEAKTTYGVIGVKV-----WVYKGDTLGRGESPGAKLDAAPSDEERKPRGP 232
Query: 71 TSEVR 57
+ R
Sbjct: 233 RRDAR 237
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 48.0 bits (109), Expect = 2e-04
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G + + + T +I I A R +++G KG I L+ Q+ I + V++ +V
Sbjct: 53 GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNLS---QELTRITGKEVKIDVIEVI 109
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 285
+ A E++ Y+L ++ RRA ++ M +GA G + +G+L G + A++ +
Sbjct: 110 KPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRAGAEGVRIRCAGRLGGAEIARAEQ 169
Query: 284 FVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 180
+ +G + +H+ DY + T H + G +GIKV
Sbjct: 170 YKEGKIPLHTLRANVDYA-SVTAHTI--AGAIGIKV 202
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 46.4 bits (105), Expect = 6e-04
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Frame = -3
Query: 605 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 426
R I + R ++G KG I L ++++FN + V + E++ T L A AES
Sbjct: 63 RINITVKTARPGIIIGRKGSEITSLREELERKFN---RRVVINIEEIKTPELDAQLVAES 119
Query: 425 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 252
+ ++ + + A + M GA+G +V+V+G+L G + A+ ++ G L +
Sbjct: 120 IASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMVAGRLGGAEIARREWYLRGRLPLQKIK 179
Query: 251 PCNDYVNTATRHVLLRQGVLGIKVKI 174
DY TAT + G +GIKV I
Sbjct: 180 AIIDY-GTAT--AWTKYGTIGIKVWI 202
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 46.0 bits (104), Expect = 8e-04
Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 1/168 (0%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G +E+ T +++ R ++G+KG+ I L + +Q N+ + + L E+V
Sbjct: 56 GIDRIEIERTRDEVRVMLYVARPGLIIGKKGQEIEILQAELQ---NLVGRRINLKVEEVG 112
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 285
L A AE + +L + RR +L M++GA+G ++ ++G+L G + A+ K
Sbjct: 113 RPELQAQLVAEDISQQLAKRSSFRRTMKRMLEQTMDAGAKGIKIQMAGRLGGAEMARREK 172
Query: 284 FVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNG 141
G + S ++ + QG +GI+V W QG G
Sbjct: 173 QSAGSIPLS--TLQAKIDYGFTEAMTPQGHIGIQV-----WINQGTYG 213
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 45.6 bits (103), Expect = 0.001
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 2/171 (1%)
Frame = -3
Query: 602 SEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESL 423
+ + + + R V+G+KG I L +QK +P V + E+V + A A+S+
Sbjct: 64 ARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGVP---VHVNIEEVRKPEIDAKLIADSI 120
Query: 422 RYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDP 249
+L + RRA ++ M GA+G +++ SG+L G + A++ + +G + +H+
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGAEIARTEWYREGRVPLHTLRA 180
Query: 248 CNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 96
DY GV+GIKV W +G+ + QP +V EP+
Sbjct: 181 NIDY---GVSEAQTTYGVIGIKV-----WVFKGEMLGRNEQP---VVAEPE 220
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 44.0 bits (99), Expect = 0.003
Identities = 40/158 (25%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G S V + + + + I++++ ++G KG + +L + +++ + + + L ++V
Sbjct: 51 GISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VKNKDISLSVDEVR 108
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 285
L A AE + ++ ++ RRA + ++SGA+G +V V G++ G A++
Sbjct: 109 VPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKGRIGGADLARAEW 168
Query: 284 FVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 174
F+ G M + + DY AT + + G+LGIKV I
Sbjct: 169 FLVGRMPLQTLRADIDY-GYATAYT--KYGILGIKVWI 203
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 43.6 bits (98), Expect = 0.004
Identities = 34/161 (21%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = -3
Query: 644 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 465
+G + +E++ +III + ++ +K RR+ EL VQK N + + + ++
Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117
Query: 464 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 285
+ AE + +L ++ R+A + ++ +G +V ++G++ G+ ++
Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177
Query: 284 FV-DG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 168
++ +G + + + + DY + R + GVLGIK+ I +
Sbjct: 178 WIREGRVPLQTIEAKIDYCSYTVRTI---YGVLGIKIWIFV 215
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 41.5 bits (93), Expect = 0.017
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Frame = -3
Query: 620 RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK---RFNIPEQSVELYAEKVATRGL 450
R P R + I + V+G G + L S + K + + V + ++ L
Sbjct: 59 RTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDTYKGQHKRVNINIVEIRKPDL 118
Query: 449 CAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 273
A + + L +A RRA G ++ + +GA+G +VSG+L G A+ ++ +G
Sbjct: 119 NAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRTMVSGRLNGADIARKEQYTEG 178
Query: 272 LM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 174
+ +H+ DY + + G LGIK I
Sbjct: 179 TVPLHTLRADIDY---SWDEAMTSYGNLGIKTWI 209
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 41.5 bits (93), Expect = 0.017
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L + S +++ T +II R VLG++G+ + + + VQK VE+
Sbjct: 47 LKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKDRNLKVEVKV 106
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRA 297
+V A A + ++ + R +R +++G +G + VSG+L G + A
Sbjct: 107 IEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVSGRLGGVEMA 166
Query: 296 KSMKFVDG 273
++ +++G
Sbjct: 167 RTEGYIEG 174
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 40.3 bits (90), Expect = 0.039
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G +E+ + I + R V+G+ G I L ++K +SV L +V
Sbjct: 51 GIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALRLQLEKMLG---KSVALNIVEVK 107
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 285
+ A AE++ +L + RRA + M GARG + VSG+L G + A++
Sbjct: 108 NPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMGARGIKTQVSGRLGGAEIARTEH 167
Query: 284 FVDG 273
+ DG
Sbjct: 168 YHDG 171
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 39.5 bits (88), Expect = 0.069
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 2/180 (1%)
Frame = -3
Query: 635 SGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 456
S V++ + + + R V+G G+R+ E+ ++ ++ + V+L +++
Sbjct: 53 SQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DLIGKKVQLNIVEISQA 109
Query: 455 GLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFV 279
L A A S+ ++ +A RRA + M++GA+G ++ SG+L G + A+
Sbjct: 110 ELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICASGRLGGVEIARREVMH 169
Query: 278 DG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTE 102
+G + +H+ DY T L G +GIKV W +G P+ + VTE
Sbjct: 170 EGRVPLHTLRADIDYGCTRAHTAL---GDVGIKV-----WVYRGDILPEAKEKSESEVTE 221
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 39.1 bits (87), Expect = 0.091
Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G VE+ R + + A ++ ++G + + + + K +Q V L +V
Sbjct: 52 GIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG-RKQLVSLKVVEVQ 110
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 285
L A A + + ++ R A V++ ++++GARG + VSG+L G + A+
Sbjct: 111 IPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVSGRLGGVEMAREEG 170
Query: 284 FVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 174
+ G+M +H+ DY + + G++G+KV I
Sbjct: 171 YTQGVMTLHTLRADIDY---SMQEAHTTYGIIGVKVWI 205
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 39.1 bits (87), Expect = 0.091
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 2/162 (1%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
L G S +E+ R I + A R V+G G + ++K + + ++L
Sbjct: 46 LERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERVRGELEK---LTGKQIQLNI 102
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRA 297
+V + A A+ + +L +A RRA + M +GA G + SG+L G + +
Sbjct: 103 LEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNAGALGIRIKCSGRLGGAEMS 162
Query: 296 KSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 174
+S + +G + +H+ DY R G +G+KV I
Sbjct: 163 RSEGYREGRVPLHTLRADIDYGFFEARTTF---GRIGVKVWI 201
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 39.1 bits (87), Expect = 0.091
Identities = 30/120 (25%), Positives = 54/120 (45%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G S V++ T R + I R V+G +G + ++K + + V+L +V
Sbjct: 50 GISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADRIRGDLEK---LTGKQVQLNILEVK 106
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKF 282
+ A A+ + +L ++ RRA ++ M+ GA+G V SG+L G +F
Sbjct: 107 NPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMKGGAKGIRVQCSGRLGGAEMSRSEF 166
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 38.3 bits (85), Expect = 0.16
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Frame = -3
Query: 629 VEVRVTPIRSEIIIMATRTQSVLGEKGR---RIRELTSVVQKRFN--------IPEQSVE 483
++ +V + E+ I TR ++G K + ++++L +Q N P V
Sbjct: 57 IQRKVDRTQVEVEIRTTRPGLLVGRKRQNCDKLKQLRDELQVELNKFRAKNGVSPTAKVA 116
Query: 482 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 303
L V + AI AE L +L +A RRA VL I +G ++ VSG+L G
Sbjct: 117 LQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVSGRLNGA 176
Query: 302 RAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 180
+++ + D V+ R G+LGIKV
Sbjct: 177 EIARSEWIRTGRVPLQTLRAD-VDYCHREAKTIYGILGIKV 216
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 37.5 bits (83), Expect = 0.28
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYA 474
LA+ S +E+ + + + + V+G+ G + L + + K + + V +
Sbjct: 46 LADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LTGKQVHINI 102
Query: 473 EKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRA 297
++ L A E + +L +A RRA ++ M +GA+G + VSG+L G A
Sbjct: 103 IEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSGRLNGADIA 162
Query: 296 KSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 174
++ + +G + +H+ DY A G LG+KV I
Sbjct: 163 RAEGYSEGTVPLHTLRADIDY---AWEEADTTYGKLGVKVWI 201
>UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3592, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 207
Score = 36.3 bits (80), Expect = 0.64
Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = -3
Query: 599 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 420
++II + ++ K RRI EL VQK N + + + ++ AE +
Sbjct: 62 QVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIA 121
Query: 419 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV-DG-LMIHSGDPC 246
+L ++ R+A + ++ +G +V ++G++ G+ ++++ +G + + +
Sbjct: 122 GQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAK 181
Query: 245 NDYVNTATRHVLLRQGVLGIKVKIML 168
DY + R + GVLGIK+ I +
Sbjct: 182 IDYCSYRVRTI---YGVLGIKIWIFV 204
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 36.3 bits (80), Expect = 0.64
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = -3
Query: 593 IIMATRTQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 417
+I TRT S+ + ++IREL SV Q +I + + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 416 KLIGGLAVRRACYGVLRFIMESGARG 339
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 36.3 bits (80), Expect = 0.64
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -3
Query: 653 LAEDGYSGVEVRVTPIRSEII 591
LAE+GYSGVEVRVTP ++II
Sbjct: 109 LAEEGYSGVEVRVTPTGTDII 129
>UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163;
Firmicutes|Rep: 30S ribosomal protein S3 - Onion yellows
phytoplasma
Length = 252
Score = 36.3 bits (80), Expect = 0.64
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = -3
Query: 605 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 426
R I + + ++G+ G +L V K + ++ V L +V A+ A++
Sbjct: 67 RITISVHTAKPGVIIGKDGDTRNKL---VAKLKELTQKDVNLNVLEVKNSDKIALLIAQN 123
Query: 425 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 252
+ +L + RR ++ +++GA+G + ++SG+L G + A+S +G + +H+
Sbjct: 124 MAEQLENRMFFRRVQKMAIQKALKAGAKGVKTLISGRLGGAEIARSEGHAEGRVPLHTLR 183
Query: 251 PCNDYVNTATRHVLLRQGVLGIKVKI 174
DY A GVLGIKV I
Sbjct: 184 ADIDY---AAVEAHTTYGVLGIKVWI 206
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 36.3 bits (80), Expect = 0.64
Identities = 26/112 (23%), Positives = 48/112 (42%)
Frame = -3
Query: 641 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 462
G V + P + + + + V+G+KG I + +++ + P + +K
Sbjct: 50 GVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDKPVNLNIIEVKKPE 109
Query: 461 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 306
T C AES+ ++ RR LR M G G ++++SG+L G
Sbjct: 110 TVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILISGRLNG 158
>UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613;
n=1; Homo sapiens|Rep: CDNA FLJ45717 fis, clone
FELNG2001613 - Homo sapiens (Human)
Length = 237
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = -2
Query: 216 CASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 76
CAS RS R Q Q P P A RP PG+ APR
Sbjct: 114 CASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPR 160
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.7 bits (76), Expect = 2.0
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 614 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 438
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 437 QAE 429
QAE
Sbjct: 225 QAE 227
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 2.3
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 500 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 327
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 326 V 324
+
Sbjct: 174 I 174
Score = 24.2 bits (50), Expect(2) = 2.3
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = -3
Query: 344 RGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 180
RG ++ +L GQ+ S+ DG ++ + + + L+ G+ G++V
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVVDADVIVVGIGSEPAGELALQIGLAGVQV 255
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 2.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 438 PGRISKIQAYRRSRCTSCLLWCSPFHH 358
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 33.9 bits (74), Expect = 3.4
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = -3
Query: 605 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 426
+ + I + R ++G+KG I +L + + N L +V + A A+S
Sbjct: 63 KCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA---ETHLNIVEVRKPEIDARLIAQS 119
Query: 425 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 252
+ +L +A RRA ++ M GA G + +G+L G + A+ + +G + +H+
Sbjct: 120 IAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCTGRLGGAEIARIEWYREGRVPLHTLR 179
Query: 251 PCNDYVNTATRHVLLRQGVLGIKV 180
DY T GV G+KV
Sbjct: 180 ADIDY---GTAEAKTAYGVCGVKV 200
>UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=1;
Arabidopsis thaliana|Rep: Uncharacterized protein
At3g06190.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 295
Score = 33.1 bits (72), Expect = 6.0
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 528 SELTDSASFLSEHTLCPGGHNNDLRADGSD 617
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 6.0
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -2
Query: 378 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 274
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
>UniRef50_UPI0000DA292B Cluster: PREDICTED: similar to Calpain small
subunit 1 (CSS1) (Calcium-dependent protease small
subunit 1) (Calcium-dependent protease small subunit)
(CDPS) (Calpain regulatory subunit) (Calcium-activated
neutral proteinase small subunit) (CANP small
subunit)...; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to Calpain small subunit 1 (CSS1)
(Calcium-dependent protease small subunit 1)
(Calcium-dependent protease small subunit) (CDPS)
(Calpain regulatory subunit) (Calcium-activated neutral
proteinase small subunit) (CANP small subunit)... -
Rattus norvegicus
Length = 165
Score = 32.7 bits (71), Expect = 7.9
Identities = 25/52 (48%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 76 SRGTGSSLGSVTR-MWSGCGFFGPFLPCWSHGNMILTLIPSTPCLRSTCLVA 228
SRG G SLG V R + SG G C G +I T IPST L ST L A
Sbjct: 39 SRGLGGSLGKVLRGLISGAAGSGGTAMCGVLGGVIST-IPSTRLLCSTTLSA 89
>UniRef50_Q9AA22 Cluster: Putative uncharacterized protein; n=1;
Caulobacter vibrioides|Rep: Putative uncharacterized
protein - Caulobacter crescentus (Caulobacter
vibrioides)
Length = 1026
Score = 32.7 bits (71), Expect = 7.9
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 24 DRLRQRRGREGAHFAGRLEGHGLVLGLCYQD 116
DR R+ GR+GA GRL G GL +G+ + +
Sbjct: 491 DRRRRPAGRDGAPVIGRLAGGGLAIGVAHAE 521
>UniRef50_O84054 Cluster: Putative uncharacterized protein; n=3;
Chlamydia|Rep: Putative uncharacterized protein -
Chlamydia trachomatis
Length = 520
Score = 32.7 bits (71), Expect = 7.9
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = -3
Query: 299 AKSMKFVDGLM--IHSGDPCNDYVNTAT---RHVLLRQGVLGIKVKIMLPWDQQGKNGPK 135
A ++K+V G++ I + D + +N+AT + + L Q LGI++ I D +
Sbjct: 167 AATVKYVKGIVDKILNNDKLSTALNSATEVEKKIALAQKALGIEITINPDADTNPDTDQE 226
Query: 134 KPQPDHILVTEPKDEP 87
P P + TE K+ P
Sbjct: 227 TPDPAPVADTEEKESP 242
>UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin H
- Ostreococcus tauri
Length = 322
Score = 32.7 bits (71), Expect = 7.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -3
Query: 410 IGGLAVRRACYGVLR----FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 264
+ GL R CYG R F+M+ GC+ S +L R K++ VD LM+
Sbjct: 146 LSGLKFRLVCYGATRPLDGFLMDVEDGGCKGATSKQLIECRKKALDIVDRLML 198
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 7.9
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 383 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 285
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
>UniRef50_UPI00015B59E8 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 271
Score = 28.7 bits (61), Expect(2) = 9.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 362 IMESGARGCEVV---VSGKLRGQRAKSMKFVDGLMIHSGDP 249
I AR C V+ V KL+ +A K VDG I++G P
Sbjct: 54 IPRQSARYCHVIFPNVEEKLKNMKALKKKLVDGKPIYAGPP 94
Score = 22.6 bits (46), Expect(2) = 9.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 137 KKPQPDHILVTEPKDEP 87
KKP+ I+V +P D+P
Sbjct: 103 KKPKQKKIVVPDPTDDP 119
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,369,911
Number of Sequences: 1657284
Number of extensions: 14515415
Number of successful extensions: 49723
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 46863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49587
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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