Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31012
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26100.2 68416.m03250 regulator of chromosome condensation (R...    29   1.6  
At3g26100.1 68416.m03251 regulator of chromosome condensation (R...    29   1.6  
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    28   3.6  

>At3g26100.2 68416.m03250 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 532

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 370 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 260
           L  G   CRR +S  V+  GHSV+ T + +V  F  N
Sbjct: 134 LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 170


>At3g26100.1 68416.m03251 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 432

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 370 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 260
           L  G   CRR +S  V+  GHSV+ T + +V  F  N
Sbjct: 34  LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 70


>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -2

Query: 300 VTPSGPMYANSPRTSRASFSVPMFFS*PVS*ALIPLEVS*PVLYPSTPMLSLS 142
           +TPS P  ++SP   R S       S PVS +  P   S P +  S+P+++ S
Sbjct: 151 ITPSSPAVSHSPPPVRHSSPPVSHSSPPVSHSSPPTSRSSPAVSHSSPVVAAS 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,798,944
Number of Sequences: 28952
Number of extensions: 166250
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)