Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31009
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)               30   1.2  
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)                  28   4.8  
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   6.3  
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         28   6.3  
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12)             27   8.3  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    27   8.3  

>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
          Length = 488

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +2

Query: 110 SEFDASPDGAYNYNFETSNGIVRSETGE 193
           +E DA PDG+YN++ ++   +V +ETGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242


>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
          Length = 599

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 125 SPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVR-GSYSYTNTDGKPETITYF 301
           SP G Y    E +  I R E  +L       +K H ++AVR G Y   + D    T+T+ 
Sbjct: 94  SPSGHYYKVCEPNFFIGRDENLDLTLKSRSVDKKHAVIAVRDGRYELYDMDSLNGTVTHS 153

Query: 302 A 304
           A
Sbjct: 154 A 154


>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 115 IRRQPRWSLQLQFRDFQRHRA*RNW*AEGGSRRRQ 219
           +RR+  WS+Q++  +  RH   + W   GG ++R+
Sbjct: 3   VRRKDAWSMQVRQVEHPRHSYVQMWRKFGGPKKRE 37


>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 113 EFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 241
           E D+     YNY+    NG+  S+ G+L      DN  HV+ A
Sbjct: 65  EPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVLNA 106


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 199 GGSRRRQQASRYCCCA 246
           GGSRRR   S++CC A
Sbjct: 97  GGSRRRNSKSKFCCFA 112


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 161 SNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADET 313
           S  + +  TG  K  LDD  KPHV+  ++ SY     D   E   +   ET
Sbjct: 204 SKTVTKMFTGFRKLTLDDLRKPHVVKDIQ-SYILNRLDDDSELRKHLTRET 253


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 125 SPDGAYNYNFETSNGIVRS----ETGELKEALDDDNKPHVIVAVRGSYSY 262
           SPDG  + NFE  NG + +        + +A++ D++  V+V ++G Y++
Sbjct: 205 SPDGICSVNFEFYNGAMSTAQCRRLSSVLQAVERDDRVKVVV-LKGGYNF 253


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 537 FVHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRH 421
           F  ++L   ++++ N+Q++  VS +L  S K M  +L H
Sbjct: 811 FQDELLMLDELIQGNIQRSQLVSEQLSDSRKTMVKVLEH 849


>SB_19798| Best HMM Match : Calx-beta (HMM E-Value=6.3e-12)
          Length = 185

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 534 VHDILKTQQIVKKNVQKNMAVSIKLITSNKRMWWMLRHTILY 409
           VH I   Q++++ N +KN    +     + + WW LR+ + Y
Sbjct: 139 VHTIF--QRLLRPNQRKNSPKKLFSACHSTKRWWRLRNVLAY 178


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 243 CVEATVTRTLTANLKPLRTSLTRLDT 320
           C   T    +T N KP +TSLTRL++
Sbjct: 348 CPVDTKAMNITVNYKPEKTSLTRLES 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,584
Number of Sequences: 59808
Number of extensions: 293828
Number of successful extensions: 888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)