Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31009
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25752.1 68418.m03053 rhomboid family protein contains Pfam p...    29   2.2  
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    28   5.1  
At5g09910.1 68418.m01146 GTP-binding protein-related contains we...    27   6.8  
At5g02590.1 68418.m00194 chloroplast lumen common family protein...    27   6.8  
At3g44060.1 68416.m04720 F-box family protein contains F-box dom...    27   6.8  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    27   6.8  
At1g18990.1 68414.m02362 expressed protein contains Pfam profile...    27   6.8  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    27   9.0  
At1g63700.1 68414.m07209 protein kinase, putative contains prote...    27   9.0  

>At5g25752.1 68418.m03053 rhomboid family protein contains Pfam
           profile PF01694: Rhomboid family
          Length = 280

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 33  HRCSSRPCGYRHRCPPLQRTTLRSFGLNSTPAPMEL-TTTISR 158
           HR S      R R PPL R    S   NST  P++    T+SR
Sbjct: 8   HRLSLPQSSLRFRFPPLHRRRAASSPTNSTQPPLQFRPLTVSR 50


>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 248  GSYSYTNTDGKPETITYFADETGYHAQGESIP 343
            GS++  N +G  E I +FA+E GY    +S+P
Sbjct: 1985 GSFTTFNKNGTAERI-FFAEEIGYELLKDSLP 2015


>At5g09910.1 68418.m01146 GTP-binding protein-related contains weak
           similarity to GTP-binding protein yptV3.
           (Swiss-Prot:P36862) [Volvox carteri]
          Length = 431

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 564 FLYQMNFIVFVHDILKTQQIVKKNVQK 484
           F  Q+N ++FVHD+  +Q+  K N+QK
Sbjct: 91  FYSQINGVIFVHDL--SQRTTKTNLQK 115


>At5g02590.1 68418.m00194 chloroplast lumen common family protein
           various predicted proteins, Arabidopsis thaliana
          Length = 326

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 3   RTKTIKNEIDHRCSSRPCGYR--HRCPPLQRTTLRSFGLNSTPAPMELTTTISRLPTASC 176
           +T  ++ +   +   +P  YR  H+ PP +   +R+   +S P P  L TT   L TA+ 
Sbjct: 12  QTLHLRLDTHRKPQPKPVSYRILHKPPPSR--VIRASSFSSNPKPSFLKTTCVTLTTAAA 69

Query: 177 V 179
           +
Sbjct: 70  L 70


>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 123 PAPMELTTTISRLPTASCVAKL 188
           P  M+LT  + +LPTASC  K+
Sbjct: 403 PKKMQLTEDLLKLPTASCKLKI 424


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
            protein contains Pfam profile: PF00149 calcineurin-like
            phosphoesterase
          Length = 1338

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 143  NYNFETSNGIVR---SETGELKEALDDD-NKPHVIVAVRGSYSYTNTDGKPETIT 295
            +++ +T NG      SET E+ + L D   KP      RG+Y    TD K ++ T
Sbjct: 1053 DFSDKTENGSKEADHSETAEISKDLSDTVGKPESCSRTRGTYEAIGTDAKLKSNT 1107


>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 524

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 167 GIVRSETGELKEALDDDNKP 226
           G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 327 RVNLFLRSPPPRAK-LLNSL 383
           RV L+L  PPPRA  LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173


>At1g63700.1 68414.m07209 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069; similar to MEK kinase
           (MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
          Length = 883

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 325 SMVSSLVSEVRNGFRFAVSVRVTVASTHSNNN 230
           S++S L S+  NG R  V++     S HSN N
Sbjct: 157 SLLSPLASDCENGNRTPVNISSRDQSMHSNKN 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,377
Number of Sequences: 28952
Number of extensions: 201497
Number of successful extensions: 629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)