Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31004
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    44   0.004
UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal ...    33   7.2  
UniRef50_A6P2H5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  

>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
           melpomene|Rep: Ribosomal protein L23a - Heliconius
           melpomene
          Length = 221

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 23/43 (53%), Positives = 25/43 (58%)
 Frame = +1

Query: 574 SKLKIAXXXXXXXXXXXXXXXXPVTKALKAQRKVVKGEHGKRV 702
           +KLKIA                PV KALK Q+KVVKGEHGKRV
Sbjct: 129 AKLKIAPKPKKTGIKGQKKVVKPVVKALKIQKKVVKGEHGKRV 171


>UniRef50_UPI00015B567B Cluster: PREDICTED: similar to ribosomal
           protein L23Ae; n=1; Nasonia vitripennis|Rep: PREDICTED:
           similar to ribosomal protein L23Ae - Nasonia vitripennis
          Length = 247

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 640 PVTKALKAQRKVVKGEHGKRV 702
           PV KALKAQ+K++KG  G RV
Sbjct: 108 PVQKALKAQKKILKGVQGSRV 128


>UniRef50_A6P2H5 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 512

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 654 CFSNRFHYFFLSLNPSLFGLRCNLQFRNCWLG 559
           C  +  H++FLS  P  FG+ C  Q R CW+G
Sbjct: 383 CNGDVGHFYFLS-QPGSFGISCPGQRRACWIG 413


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.310    0.123    0.331 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,832,328
Number of Sequences: 1657284
Number of extensions: 3530712
Number of successful extensions: 5821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5820
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)