Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31002
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   4.2  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    24   7.3  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    24   7.3  
SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   9.6  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 309 SPR*CASFQQLYVL*SFFNYSAAFLRSSNMSF 214
           SP  C+  QQL +  SF NYS    R++   F
Sbjct: 33  SPIECSPIQQLDLSGSFKNYSTTSSRANGKKF 64


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 43  LAVRHPKPTQQQWRMMKRSKAKQAEIDRKRAEVRKR 150
           LA R P  +QQQ     R+K K  +++  +A +  R
Sbjct: 539 LASRQPAQSQQQSSQRSRNKFKGFQLNLSKATLYNR 574


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 173 WLWRPPAMRLRTSARLRSISACLALLRFIIRH 78
           + W     ++RT    +S+SAC  + R   RH
Sbjct: 351 FFWDSIDSKIRTMCLEQSLSACAIMKRVYFRH 382


>SPCC794.15 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 86

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 293 PPFSSFTFYDPSSTI 249
           PPF SF  ++PS TI
Sbjct: 42  PPFVSFPRHEPSETI 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,118,588
Number of Sequences: 5004
Number of extensions: 15317
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)