Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31002
         (339 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 31   0.24 
SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34)                     31   0.32 
SB_32063| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.73 
SB_36493| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)                      26   9.0  

>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 52  RHPKPTQQQWRMMKRSKAKQAEIDRKRAEVRKRMAGG 162
           +H KP  QQWR  +R   K+ EI +K  + +    GG
Sbjct: 511 QHQKPKSQQWR--ERLNLKKEEIPKKTEDTKSEEVGG 545


>SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34)
          Length = 273

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 70  QQQWRMMKRSKAKQAEIDRKRAEVRKRMAGGLQSQK 177
           QQQ +  ++ +  Q   D+K+ E+ +RM G + SQ+
Sbjct: 57  QQQQQQQQQQQQHQQRTDKKQTEIDRRMEGQIDSQR 92


>SB_32063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.5 bits (63), Expect = 0.73
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 326 LGLPHLVLDDAPPFSSFTFYDPSSTIR 246
           +GL   VL   PP+  F+F DP+  IR
Sbjct: 193 IGLSRFVLAHLPPYRPFSFLDPAFAIR 219


>SB_36493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +1

Query: 28  GHLLILAVRHPKPTQQQ----WRMMKRSKA-KQAEIDRKRAEVR 144
           G LL + +RH KP  Q+     R+MKR    K+A + ++ +E R
Sbjct: 64  GRLLCVTIRHRKPASQKKPAFSRLMKRDACEKKAPVVQRSSESR 107


>SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)
          Length = 584

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 95  EVRPNRPKSTASALRCASAWQEASKAKKAKKG 190
           EV     KS   +    +   +ASKAKK KKG
Sbjct: 432 EVSEGEKKSKKKSANAENGGDKASKAKKEKKG 463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,994,669
Number of Sequences: 59808
Number of extensions: 129220
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)