Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31002
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   9.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 40  ILAVRHPKPTQQQWRM 87
           IL +R PK T+ +W M
Sbjct: 345 ILMMRRPKKTRLRWMM 360


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = +1

Query: 34   LLILAVRHPKPTQQQWRMMKRS 99
            ++   V H K  QQ+W  +  +
Sbjct: 1491 MIYFVVEHKKKNQQEWNQVSNN 1512


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 43  ELEDGPTRWL*P 8
           E +DGP +W+ P
Sbjct: 73  EEDDGPYKWISP 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,756
Number of Sequences: 438
Number of extensions: 1251
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)