Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31002
         (339 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55370.1 68418.m06899 long-chain-alcohol O-fatty-acyltransfer...    28   1.8  
At1g55160.1 68414.m06299 expressed protein                             27   4.2  
At5g03660.1 68418.m00325 expressed protein low similarity to out...    26   5.6  
At3g22660.1 68416.m02860 rRNA processing protein-related contain...    26   7.4  
At5g02250.1 68418.m00148 ribonuclease II family protein contains...    25   9.7  
At3g01100.1 68416.m00015 early-responsive to dehydration protein...    25   9.7  
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate...    25   9.7  

>At5g55370.1 68418.m06899 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase similarity to wax synthase
           wax synthase - Simmondsia chinensis, PID:g5020219
           similar to wax synthase [gi:5020219] from Simmondsia
           chinensis
          Length = 343

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 173 WLWRPPAMRLRTSARLRSISACLALLRFIIRHCCCV 66
           WL+ P    LR     R IS CL ++  + RH  C+
Sbjct: 308 WLFYP--QMLRNDVHKRVISECLLVIDVVKRHVVCI 341


>At1g55160.1 68414.m06299 expressed protein
          Length = 188

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 37  LILAVRHPKPTQQQWRMMKRSKAKQAEIDRKRAEVRKR 150
           +++  R P P +QQ  + K    ++ +++ K AE +KR
Sbjct: 131 VVIKAREPIPEKQQRELFKWMLEEKRKVNPKNAEEKKR 168


>At5g03660.1 68418.m00325 expressed protein low similarity to outer
           surface protein F [Borrelia burgdorferi] GI:466482;
           contains Pfam profile PF04949: Family of unknown
           function (DUF662)
          Length = 173

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 100 KAKQAEIDRKRAEVRKRMAGGL 165
           KAK+ EI++K+ E+R+R+   L
Sbjct: 48  KAKEEEIEKKKMEIRERVQAQL 69


>At3g22660.1 68416.m02860 rRNA processing protein-related contains
           weak similarity to rRNA processing protein EBP2
           (EBNA1-binding protein homolog) (Swiss-Prot:P36049)
           [Saccharomyces cerevisiae]
          Length = 293

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 82  RMMKRSKAKQAEIDRKRAEVRKRMAGGLQSQK 177
           R++   K  +   +R++A   KRMA  +QSQK
Sbjct: 142 RLLHEKKQIEESEERRKARDNKRMAKEVQSQK 173


>At5g02250.1 68418.m00148 ribonuclease II family protein contains
           Pfam profile PF00773: RNB-like protein
          Length = 803

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 46  AVRHPKPTQQQWRMMKRSKAKQAE 117
           ++  P+PT+Q   +++R + K+AE
Sbjct: 252 SIYSPRPTEQVEELLRRQRVKEAE 275


>At3g01100.1 68416.m00015 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 703

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 117 FGLFGLTSLHHPPLLLCWFRVSYC 46
           FGL G+T     PL+L +  V YC
Sbjct: 551 FGLLGITYFFLSPLILPFLLVYYC 574


>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
            very low similarity to SP|Q9UUA2 DNA repair and
            recombination protein pif1, mitochondrial precursor
            {Schizosaccharomyces pombe}; contains weak hit to
            PF02178: AT hook motif
          Length = 1678

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
 Frame = +1

Query: 58   PKPTQQQWRMMKRSKAKQAEIDRKRAEVRKRMAGGLQSQKG*EGFHDTXXXXXXXXXXXX 237
            PKPT+ +W+ M     +Q  +     E      GG+    G  G   T            
Sbjct: 1220 PKPTRDEWKQM--LTPEQRGVYNAITEAVFNNLGGVFFVYGFGGTGKTFIWKTLSAAIRC 1277

Query: 238  XSRRIVEEGS*NVK--LLKGGASSRTRCGKPNNIDD 339
              + ++   S  +   LL+GG ++ +R G P N D+
Sbjct: 1278 RGQIVLNVASSGIASLLLEGGRTAHSRFGIPLNHDE 1313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,179,930
Number of Sequences: 28952
Number of extensions: 88269
Number of successful extensions: 254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)