Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30999
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    63   4e-11
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    31   0.19 
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac...    28   1.8  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.3  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   7.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   7.1  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   7.1  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   7.1  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   9.4  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   9.4  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   9.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   9.4  

>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 26/42 (61%), Positives = 33/42 (78%)
 Frame = +1

Query: 655 FRGRTDLIEYAKKENIPVSATPKEPWSTDENIMHISYESGVL 780
           F GR DL+EYA  + IPV+ T K+PWS DENI+H SYE+G+L
Sbjct: 155 FAGRKDLLEYAAAKGIPVTQTTKKPWSMDENIVHCSYEAGIL 196



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +3

Query: 288 IAHGATGKGNDQVRFELSMYSLWPEGKV 371
           ++HG TGKGNDQVRFEL+ Y+L P+ +V
Sbjct: 115 VSHGCTGKGNDQVRFELAYYALKPDVQV 142



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +3

Query: 609 LQIIAPWRIPEFFQRFQGK 665
           +Q+IAPWR+P FF+RF G+
Sbjct: 140 VQVIAPWRLPVFFERFAGR 158


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = -1

Query: 430 LTTLCLLYVNIFVPFFCTEHTFPSGHNEYMLNSNRT-WSFPFPVAPWAMYL*LLMLNFVF 254
           LT L L +++ ++ +      F   ++ YM ++  T W   F   P  +Y  LL    + 
Sbjct: 657 LTDLVLFFLDTYLWYMLISTMFSIAYSFYMGSAIWTPWRVIFSNLPRRIYFTLLAYKDLS 716

Query: 253 IALEGQIDSGSIWY*VVSGAYRRH 182
              + +I  G IW  ++   YR H
Sbjct: 717 TEFKPKIYVGQIWNSIMISMYREH 740


>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 136

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 361 KERYVLYKKKEQIYLHTVNKVSSVWSL*KINRQVIHFFL 477
           K++Y +  +  QI  HTV+ V +V  L  ++RQ+  ++L
Sbjct: 44  KDKYTVAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWL 82


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 722 FGVAETGIFSFLAYSIKSVLPLKPLEEF 639
           +G  E+G+ SFLAY+ K  L  K L  F
Sbjct: 315 YGTTESGLVSFLAYNGKDTLHNKELVYF 342


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 328 RTWSFPFPV-APWAMYL*LLMLNFVFIALEGQIDSGS 221
           R ++  FP  A W ++  LL+LN + + L   +D+GS
Sbjct: 588 RCFTLLFPSGATWVLFFVLLLLNVIDLVLFMVLDTGS 624


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -1

Query: 445 FIKTTLTTLCLLYVNIFVPFFCTEHTFPSGHNEYMLNSNRTWSF 314
           F K +   LC+ Y N  +  F   H F     EYM      W F
Sbjct: 452 FEKNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYM-KEEIVWDF 494


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 498 KRIIVVLLAYSVTWAVDLAFLNTEKFS-YVVNYKNFKILQIIAPW 629
           +R+++V++          A L +  FS Y ++YK F+IL II  W
Sbjct: 37  RRLLIVVITLYRRIVECCASLCSLIFSKYYLHYKTFRILTIIQSW 81


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +3

Query: 216 QMDPESICPSNAIKTKLSINNYRYIA 293
           ++DPE++ PSN+ +T   ++NY Y++
Sbjct: 49  EVDPETL-PSNSPETNDDVSNYDYMS 73


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 415  LLYVNIFVPFFCTEHTFPSGHNEYMLNSNRTWSFPFPV 302
            +L V+I    FC    F  GH   ++   R W + F +
Sbjct: 917  VLVVDILATLFCIFGWFKGGHQTSIVAVIRIWMYSFGI 954


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 210 KWLAEPIDVTMSSLSKMETLNL 145
           KWLAEPI V  ++  +  +LN+
Sbjct: 112 KWLAEPITVDPNTTVEFSSLNI 133


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 328 RTWSFPFPV-APWAMYL*LLMLNFVFIALEGQIDSGSIWY*VVSGAYRRHNVVTQ 167
           R+++  FP    W ++L L +LNF        +D G+ +   +   YR  N + Q
Sbjct: 613 RSFTLLFPSKTTWVLFLNLTLLNFASFFFFMVLDLGNSYVDKIPVGYRIMNAIFQ 667


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 640 NSSKGFRGRTDLIEYAKKENIPVSATPKEP 729
           NS+      TDL+  A K+++P ++TP +P
Sbjct: 288 NSTGKTSKTTDLLIAASKKSLPSNSTPSKP 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,605
Number of Sequences: 5004
Number of extensions: 74072
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)