Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30999
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)                 28   7.6  
SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)               28   7.6  

>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 18/26 (69%), Positives = 24/26 (92%)
 Frame = +3

Query: 282 RYIAHGATGKGNDQVRFELSMYSLWP 359
           +++ HGATGKGNDQVRFEL+ Y+L+P
Sbjct: 136 QFVTHGATGKGNDQVRFELTYYALFP 161



 Score = 35.1 bits (77), Expect = 0.066
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +3

Query: 591 YKNFKILQIIAPWRIPEFFQRFQGK 665
           Y  F  ++ I+PWR+PEFF++F+G+
Sbjct: 157 YALFPGVRTISPWRMPEFFEKFKGR 181


>SB_54663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 668 VLPLKPLEEFRDAPRCYNLQNFKVFIIHNIAKFLCIKKGQVHCP 537
           V P  P+ E R  PRC +  N+    + N+A+ +C + G   CP
Sbjct: 238 VNPQTPVSERRLCPRCTSPSNYTQ--VQNVAQCICERCGNEFCP 279


>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +3

Query: 504 IIVVLLAYSVTWAV---DLAFLNTEKFSYVVNYKNFK--ILQIIA-PWRIPEFFQ 650
           +IV  + YS  W +   DL+F N +     + Y  F    + I+A  WRIPEF Q
Sbjct: 225 VIVTWMPYSFYWVILSLDLSFYN-KYIEITILYLQFSNSCINIVAYAWRIPEFRQ 278


>SB_40143| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-09)
          Length = 334

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
 Frame = +3

Query: 504 IIVVLLAYSVTWAVDLAF-----LNTEKFSYV-------VNYKNFKILQIIAPWRIPEFF 647
           +++V LA  VTW  ++ +     LN   ++Y        + Y N  I  ++  WRIPEF 
Sbjct: 220 LLIVTLASLVTWIPNMCYWVILRLNFLSYNYYTEMTLRYLQYSNSCINIVVYAWRIPEFK 279

Query: 648 Q 650
           Q
Sbjct: 280 Q 280


>SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)
          Length = 1311

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 477 SNPNKNQKRIIVVLLAYSVTWAVDLAFLNTEKFSYVVNYKNFKI 608
           S+PN  +K +I + +A     +    F+  + F++   YKN KI
Sbjct: 589 SSPNSTKKSVITLRIAQKEDGSQTRQFILLDVFAFPTQYKNRKI 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,656,943
Number of Sequences: 59808
Number of extensions: 515818
Number of successful extensions: 1162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)