Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30999
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF016416-4|AAB65273.2|  150|Caenorhabditis elegans Hypothetical ...    30   1.7  
U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical
           protein T22F7.1 protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 509 DNSFLIFIWITKKKCITCLFIFYKDHTDDTLFTVCKYIC 393
           D S  + IW+  K C +C +IF   +  +   T C+  C
Sbjct: 420 DTSLHLIIWLVAKFCASCCYIFCFIYAAELFPTWCRSCC 458


>AF016416-4|AAB65273.2|  150|Caenorhabditis elegans Hypothetical
           protein F29A7.3 protein.
          Length = 150

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 313 EMTKCGLN*ACIRYGQKERYVLYKKKEQIYLHTVNKVSSVWSL 441
           E   C LN A +  G+K  Y +Y    Q YL T+N  +  W++
Sbjct: 105 EQPSCKLNVALLLNGKK--YQIYSNDTQHYLWTINAAADGWTI 145


>U28738-2|AAA68309.4|  982|Caenorhabditis elegans Hypothetical
           protein T28D9.7 protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 292 PTEPLEREMTKCGLN*ACIRYGQKERYVLYKKKEQIY 402
           P + L R+M K      C +  +K R  +YKKK Q Y
Sbjct: 780 PMDALTRQMKKVATCSCCKKPIEKSREPIYKKKSQSY 816


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,721,462
Number of Sequences: 27780
Number of extensions: 404607
Number of successful extensions: 1070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)