Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30999
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   1.9  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   3.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   3.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   10.0 

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 466 VSLVCLFFIKTTLTTLCLLYVNIFVPFFCTEH 371
           +++VCL F    ++T+ L ++N  +P   + H
Sbjct: 388 LTVVCLAFWSFIVSTILLWFINKIIPIRMSIH 419


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 69  TRSSAFEDVNKEMRSSDLLTPNKLTSNLK 155
           TRS A + +NKE R S+L  P  LT + +
Sbjct: 244 TRSFAHQSINKEAR-SNLYLPFHLTLSFR 271


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 69  TRSSAFEDVNKEMRSSDLLTPNKLTSNLK 155
           TRS A + +NKE R S+L  P  LT + +
Sbjct: 239 TRSFAHQSINKEAR-SNLYLPFHLTLSFR 266


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 485 WITKKKCITCLFIFYKDHTDDTLFTVCK 402
           +I    C+T   +F+K H  +   T CK
Sbjct: 49  FIDAGSCLTPDSVFFKSHITEAFQTQCK 76


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 485 WITKKKCITCLFIFYKDHTDDTLFTVCK 402
           +I    C+T   +F+K H  +   T CK
Sbjct: 49  FIDAGSCLTPDSVFFKSHITEAFQTQCK 76


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 463 SLVCLFFIKTTLTTLCLL 410
           +L+C+FF+ T ++T  +L
Sbjct: 431 ALLCVFFLTTIVSTTVIL 448


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 688 KKENIPVSATPKEPWSTD 741
           K+E I +S +   PWS D
Sbjct: 558 KREGIELSRSNPTPWSED 575


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,073
Number of Sequences: 438
Number of extensions: 5547
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)