Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30999
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24830.1 68417.m03557 arginosuccinate synthase family contain...    50   2e-06

>At4g24830.1 68417.m03557 arginosuccinate synthase family contains
           Pfam profile: PF00764 arginosuccinate synthase
          Length = 494

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = +1

Query: 658 RGRTDLIEYAKKENIPVSATPKEPWSTDENIMHISYESGVL 780
           +GR D IEYAKK N+PV  T K  +S D N+ H+S+E  +L
Sbjct: 245 QGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDLL 285



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +3

Query: 288 IAHGATGKGNDQVRFELSMYSLWPEGKV 371
           +AHG TGKGNDQVRFEL+ +SL PE KV
Sbjct: 208 VAHGCTGKGNDQVRFELTFFSLNPELKV 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,397,560
Number of Sequences: 28952
Number of extensions: 365686
Number of successful extensions: 800
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)