Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30998
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 593 TVCKKNLEGQSFFAKGGRPFCKTHAR*KSNKNN 691
           TV   N + +S+F +GGR + K       N NN
Sbjct: 8   TVSYTNKKDESYFDEGGRSYGKGRGFIIQNNNN 40


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 77  SSAPKRGRGILNKPALPGSRVPLCASCNG 163
           +S   +GR IL  P+   +  P C+S NG
Sbjct: 872 ASDSAQGRAILKIPSYKPASTPGCSSKNG 900


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 64  FTTCGSSYTGTFKNGN 17
           +TTC      TFKNGN
Sbjct: 68  YTTCIMKLLRTFKNGN 83


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +2

Query: 431 GNNPFFLEDGLPYC----EADWNELFTTKCFACGFPVEAGDRWVEALNNNYHSQCFNCTV 598
           G+  ++L  G  +C    +AD  +   T+C    F  EAG    EA   +  S  +  T 
Sbjct: 236 GDGKWYLPSGGCHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDYGFTE 295

Query: 599 CK 604
           C+
Sbjct: 296 CR 297


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +2

Query: 314 YIAPACDK---CHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNN 439
           Y+  AC K   C  ++K       G+    + + C  CGK FG N
Sbjct: 204 YVCKACGKGFTCSKQLKVHTRTHTGE----KPYTCDICGKSFGYN 244


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 172 RSIHHGSWTHMVPRALHLRECNMQTS 249
           R +HH      + R LH+   +++TS
Sbjct: 149 RCLHHDIENAHIRRTLHMNRTSLKTS 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,267
Number of Sequences: 438
Number of extensions: 5012
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)