Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30998
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 53 2e-07
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 50 1e-06
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 40 4e-05
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 41 5e-05
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 45 5e-05
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 40 0.001
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 40 0.002
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 40 0.002
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 40 0.002
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 40 0.002
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 37 0.017
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 33 0.27
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 32 0.47
At2g18460.2 68415.m02148 expressed protein contains Pfam domain,... 31 0.83
At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase fa... 31 1.1
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 30 1.9
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put... 28 5.8
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 28 5.8
At1g61840.1 68414.m06978 DC1 domain-containing protein similar t... 28 5.8
At1g45243.1 68414.m05188 DC1 domain-containing protein contains ... 28 5.8
At1g19200.1 68414.m02390 senescence-associated protein-related s... 28 5.8
At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein c... 28 7.7
At1g74940.1 68414.m08695 senescence-associated protein-related s... 28 7.7
At1g36280.1 68414.m04509 adenylosuccinate lyase, putative / aden... 28 7.7
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 53.2 bits (122), Expect = 2e-07
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Frame = +2
Query: 269 VEENGQLYCEFCFEQYIAPACDKCHAKIK-GDCLNAIGKHFHPECFNCVYCGK-----LF 430
VEE+G L + CD C + I+ G ++A+G ++HPECF C YC K +
Sbjct: 181 VEEDGNLPRVDLNVNHPHSICDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEY 240
Query: 431 GNNPFFLEDGLPYCEADWNELFTTKCFACGFPVEAGDRWVEALNNNYHS-QCFNCTV 598
+PF+ E P+ E D T KC +C G ++V +N + +C C V
Sbjct: 241 KEHPFWKEKYCPFHEVDG----TPKCCSCERLEPWGTKYVMLADNRWLCVKCMECAV 293
Score = 34.3 bits (75), Expect = 0.089
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 452 EDG-LPYCEADWNELFTTKCFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKK 607
EDG LP + + N + C C +E G R V AL N+H +CF C C K
Sbjct: 183 EDGNLPRVDLNVNHPHSI-CDGCKSAIEYG-RSVHALGVNWHPECFCCRYCDK 233
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +2
Query: 143 LCASCNGNIR-GPFITALGRIWCPEHFICVNATCRRPLQDIGFVEEN--GQLYCEFCFEQ 313
+C C I G + ALG W PE F C C +P+ + E + YC F E
Sbjct: 200 ICDGCKSAIEYGRSVHALGVNWHPECFCC--RYCDKPIAMHEYKEHPFWKEKYCPF-HEV 256
Query: 314 YIAPACDKC 340
P C C
Sbjct: 257 DGTPKCCSC 265
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 50.4 bits (115), Expect = 1e-06
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 5/135 (3%)
Frame = +2
Query: 5 RHEAVSVF-KGSSVGAAT---RGKTFGVSSAPKRGRGILNKPALPGSRVPLCASCNGNI- 169
RH++ S + G++ GA G +G + G +P +CA CN I
Sbjct: 121 RHKSGSTYDNGNAYGAGDLYGNGHMYGGGNVYANGDIYYPRPITFQMDFRICAGCNMEIG 180
Query: 170 RGPFITALGRIWCPEHFICVNATCRRPLQDIGFVEENGQLYCEFCFEQYIAPACDKCHAK 349
G F+ L +W PE F C C +P+ + F + + C+ + P CD C
Sbjct: 181 HGRFLNCLNSLWHPECFRCYG--CSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHF 238
Query: 350 IKGDCLNAIGKHFHP 394
I + I HP
Sbjct: 239 IPTNHAGLIEYRAHP 253
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 329 CDKCHAKI-KGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELFTTK 505
C C+ +I G LN + +HPECF C C + F P+ +A + E + K
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPK 231
Query: 506 CFAC 517
C C
Sbjct: 232 CDVC 235
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 503 KCFACGFPVEAGDRW-VEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
KC C V D +E + YH CF CT CK L+ ++ + G +CKTH
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMP--YHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTH 61
Score = 37.5 bits (83), Expect(2) = 4e-05
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 299 FCFEQYIAPACDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEA 478
FC Q AC+K ++ + G+ FH CF C + G ++ + D + YC
Sbjct: 97 FCGTQDKCAACEKTVYPLEK--IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRH 154
Query: 479 DWNELFTTK 505
+N+LF K
Sbjct: 155 HFNQLFMEK 163
Score = 37.1 bits (82), Expect(2) = 7e-04
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 329 CDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELF 496
CDK + D L+ G +H CF C +C + + DG+ YC+ + +LF
Sbjct: 13 CDKTVYVV--DMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF 66
Score = 27.5 bits (58), Expect(2) = 4e-05
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 209 PEHFICVNAT-CRRPLQDIGFVEENGQLYCEFCFEQ 313
P H C T C+ LQ + +G LYC+ FEQ
Sbjct: 29 PYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQ 64
Score = 23.4 bits (48), Expect(2) = 7e-04
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +2
Query: 503 KCFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
KC AC V ++ ++ +H CF C L S+ + +C+ H
Sbjct: 103 KCAACEKTVYPLEK-IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHH 155
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +2
Query: 503 KCFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
KC AC V A + + A YH CF CT CK L+ S+ + G +CK H
Sbjct: 9 KCKACEKTVYAVEL-LSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61
Score = 36.3 bits (80), Expect(2) = 5e-05
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 329 CDKCHAKIKG-DCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELF 496
C C + + L+A G +H CF C +C + + +G+ YC+ + +LF
Sbjct: 10 CKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLF 66
Score = 28.3 bits (60), Expect(2) = 5e-05
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 503 KCFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
KC C V ++ V + YH CF C+ + ++ A G +CK H
Sbjct: 107 KCATCSKTVYPIEK-VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHH 159
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 386 FHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELFTTK 505
+H CF C + G + + +G+ YC+ + +LF K
Sbjct: 128 YHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEK 167
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 45.2 bits (102), Expect = 5e-05
Identities = 30/94 (31%), Positives = 40/94 (42%)
Frame = +2
Query: 191 LGRIWCPEHFICVNATCRRPLQDIGFVEENGQLYCEFCFEQYIAPACDKCHAKIKGDCLN 370
+G +W PE F C NA C +P+ D F + Y + C+++ P CD CH I +
Sbjct: 1 MGGVWHPECFCC-NA-CDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAG 58
Query: 371 AIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYC 472
I HP YC P DG P C
Sbjct: 59 LIEYRAHPFWMQ-KYC-------PSHERDGTPRC 84
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 374 IGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELFTTKCFAC 517
+G +HPECF C C K + F + PY + + E KC C
Sbjct: 1 MGGVWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVC 48
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 569 YHSQCFNCTVCKKNLEGQSFFAKGGRPFCK 658
+H +CF C C K + F G RP+ K
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHK 34
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 40.3 bits (90), Expect = 0.001
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Frame = +2
Query: 326 ACDKCHAKIKGDCLNAIGKHFHPECFNCVYC-GKLFGNNPFFLEDGLPYCEADWNELFT- 499
ACDK + D L G +H CF C +C G L +N + DG+ YC+ + +LF
Sbjct: 12 ACDKTVYVM--DLLTLEGNTYHKSCFRCTHCKGTLVISN-YSSMDGVLYCKPHFEQLFKE 68
Query: 500 ----TKCFACGFPVEAGD---RWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCK 658
+K F G + D R L++ + C CKK + G + K
Sbjct: 69 SGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVTMEGESYHK 128
Query: 659 T 661
T
Sbjct: 129 T 129
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +2
Query: 503 KCFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
KC AC V D + N YH CF CT CK L ++ + G +CK H
Sbjct: 9 KCKACDKTVYVMDL-LTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPH 61
Score = 35.5 bits (78), Expect(2) = 0.010
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 377 GKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELFTTK 505
G+ +H CF C + G ++ + +G+ YC+ +N+LF K
Sbjct: 123 GESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEK 165
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 503 KCFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
KC C V ++ V +YH CF CT L S+ + G +CK H
Sbjct: 105 KCATCKKTVYPLEK-VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVH 157
Score = 21.0 bits (42), Expect(2) = 0.010
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 233 ATCRRPLQDIGFVEENGQLYCEFCF 307
ATC++ + + V G+ Y + CF
Sbjct: 107 ATCKKTVYPLEKVTMEGESYHKTCF 131
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Frame = +2
Query: 146 CASCNGNIRGPFITAL-GRIWCPEHFICV---NATCRRPLQDIGFVEE-NGQLYCEFCFE 310
C+ CNG + +++ G ++C HF + + + Q G E+ N
Sbjct: 38 CSHCNGTLVICNYSSMDGVLYCKTHFEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLS 97
Query: 311 QYIAPACDKCHAKIKG----DCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEA 478
+ + DKC A K + + G+ +H CF C + G ++ + DG+ YC+
Sbjct: 98 SFFSGTQDKCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKV 157
Query: 479 DWNELFTTK 505
+++LF K
Sbjct: 158 HFSQLFLEK 166
Score = 35.1 bits (77), Expect = 0.051
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 497 TTKCFACGFPVEAGDRW-VEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
T KC AC V D +E + YH CF C+ C L ++ + G +CKTH
Sbjct: 8 TDKCKACDKTVYVMDLMTLEGMP--YHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 503 KCFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
KC AC V ++ +YH CF C L S+ A G +CK H
Sbjct: 106 KCAACKKTVYPLEKMTME-GESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVH 158
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 146 CASCNGNIR-GPFITALGRIWCPEHFICVNATCRRPLQDIGFVEENGQLYCEFCFEQYIA 322
C C I G I A G +W P+ F C+ CR P+ + + + +Y + C+++
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLR--CREPIA-MNEISDLRGMYHKPCYKELRH 1296
Query: 323 PACDKCHAKIKGDCLNAIGKHFHP 394
P C C KI + H HP
Sbjct: 1297 PNCYVCEKKIPRTA-EGLKYHEHP 1319
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 329 CDKCHAKIK-GDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELFTTK 505
C C + I+ G +NA G +HP+CF C+ C + N G+ Y + + EL
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDLRGM-YHKPCYKELRHPN 1298
Query: 506 CFAC 517
C+ C
Sbjct: 1299 CYVC 1302
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 329 CDKCHAKI-KGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDG--LPY-CEADWNELF 496
C C++ I G+ L +G FHPECF C CG + D + Y C WN+ +
Sbjct: 162 CGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYAITEHEIPTNDAGLIEYRCHPFWNQKY 221
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +2
Query: 497 TTKCFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
T KC AC V D+ + A N YH CF C CK L+ ++ + G +C+ H
Sbjct: 7 TQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 503 KCFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
KC C V ++ V YH CF CT + ++ A G+ +CK H
Sbjct: 109 KCVGCDKTVYPIEK-VSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHH 161
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 329 CDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELFTTK 505
CDK I+ +N G +H CF C + G + + +G YC+ +L K
Sbjct: 113 CDKTVYPIEKVSVN--GTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEK 169
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 503 KCFACG---FPVEAGDRWVEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTH 664
KC AC +PVE + A +YH CF C+ CK L+ ++ + G +C+ H
Sbjct: 9 KCRACEKTVYPVEL----LSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 326 ACDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELF 496
AC+K + + L+A G +H CF C +C + + +G+ YC + +LF
Sbjct: 12 ACEKTVYPV--ELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLF 66
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 386 FHPECFNCVYCGKLFGNNPFFLEDGLPYCEADWNELFTTK 505
+H CF C + G + + +G+ YC+ + +LF K
Sbjct: 129 YHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEK 168
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 548 VEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKTHAR*KSNKNNLQLG 703
V L NN+H C +CKK ++FF G +C +K + LG
Sbjct: 716 VSVLPNNHHMSRPFCFICKKRCPHKTFFQCNGFEYCSRSCLLTKSKEVIYLG 767
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 31.9 bits (69), Expect = 0.47
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +2
Query: 239 CRRPLQDIGFVEENGQLYCEFCFEQYIAPACDKCHA--KIKGDCLNAIGKHFHPECFN-- 406
C ++ G V G L+ CF AC K A I+ N+ GK FH C+
Sbjct: 289 CNFAVEHGGSVNILGVLWHPGCF---CCRACHKPIAIHDIENHVSNSRGK-FHKSCYERY 344
Query: 407 CVYCG----KLFGNNPFFLEDGLPYCEADWNELFTTKCFAC 517
C C K + N+PF+ E P EAD T KC +C
Sbjct: 345 CYVCKEKKMKTYNNHPFWEERYCPVHEADG----TPKCCSC 381
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 329 CDKCHAKIK-GDCLNAIGKHFHPECFNCVYCGK 424
C C+ ++ G +N +G +HP CF C C K
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHK 318
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 506 CFACGFPVEAGDRWVEALNNNYHSQCFNCTVCKK 607
C C F VE G V L +H CF C C K
Sbjct: 286 CGGCNFAVEHGGS-VNILGVLWHPGCFCCRACHK 318
>At2g18460.2 68415.m02148 expressed protein contains Pfam domain,
PF04367: Protein of unknown function (DUF502); contains
non-consensus splice sites
Length = 246
Score = 31.1 bits (67), Expect = 0.83
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 627 SSPREVGLSVKHTPVKSPIKIIYNSDTVYSTTTFSSG 737
+SPR+V LSV +P+ SPI IY +++ F +G
Sbjct: 19 ASPRDVVLSVPPSPLASPIHAIYKVIRSWASKKFMTG 55
>At1g27570.1 68414.m03360 phosphatidylinositol 3- and 4-kinase
family protein contains Pfam profile PF00454:
Phosphatidylinositol 3- and 4-kinase
Length = 649
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 140 AHESRAGQAYSIFPFLVLVPMIPQKFYHVWQLLHW 36
A+E+R+ Q +FP L +PM Q H+ Q++HW
Sbjct: 322 ANENRSSQILEVFPTLSSLPM--QLRDHLQQMIHW 354
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 329 CDKCHAKIKGD-CLNAIGKHFHPECFNCVYCGK 424
C C++ +K + +N +G +HP CF C C K
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDK 379
>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 793
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 152 SCNGNIRGPFITALGRIWCPEH-FICVNATCRRPLQDI 262
SC N+ G ++ G +W P+ F+CV C + L D+
Sbjct: 345 SCKKNLAGEYVLPNGVVWKPQFMFLCV---CTKVLGDV 379
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 28.3 bits (60), Expect = 5.8
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 4/141 (2%)
Frame = +2
Query: 62 KTFGVSSAPKRGRGILNKP---ALPGSRVPLCASCNGNI-RGPFITALGRIWCPEHFICV 229
++ V S P+ G + +P +P S +C C I G F++A W + V
Sbjct: 160 ESMNVGSPPRYDPGNILQPYPFLIPSSH-RICVGCQAEIGHGRFLSA----WVAFGILNV 214
Query: 230 NATCRRPLQDIGFVEENGQLYCEFCFEQYIAPACDKCHAKIKGDCLNAIGKHFHPECFNC 409
+ F + Y + C+++ P CD CH I + I HP
Sbjct: 215 SVAMH-------FSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLIEYRAHPFWMQ- 266
Query: 410 VYCGKLFGNNPFFLEDGLPYC 472
YC P DG P C
Sbjct: 267 KYC-------PSHERDGTPRC 280
>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
hypothetical protein GI:3184279 from [Arabidopsis
thaliana]; contains Pfam profile PF03107: DC1 domain
Length = 814
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 329 CDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLF 430
C+ + G C G +F + + CVYC K++
Sbjct: 290 CNNKEFNVDGGCDICSGSNFGTDYYFCVYCDKIY 323
>At1g45243.1 68414.m05188 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 263
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 548 VEALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKT 661
V+ L NN H C+ CK ++F + G FC T
Sbjct: 220 VDVLPNNQHMSRPICSFCKNRCPYKTFLIRLGFRFCST 257
>At1g19200.1 68414.m02390 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana];
Length = 215
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 587 NCTVCKKNLEGQSFFA-KGGRPFCKTHAR 670
+C +CKK L+G+ + KG FC R
Sbjct: 153 SCCLCKKKLQGKDIYMYKGDEGFCSKECR 181
>At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 161
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 590 CTVCKKNLEGQSFFAKGGRPFCKTH 664
CTVC+K + F + G FC +H
Sbjct: 102 CTVCRKRVGLTGFMCRCGTTFCGSH 126
>At1g74940.1 68414.m08695 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana]
Length = 222
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 587 NCTVCKKNLEGQSFFA-KGGRPFCKTHAR 670
+C +CKK L+G+ + KG FC R
Sbjct: 153 SCCLCKKKLQGKDIYMYKGEMGFCSAECR 181
>At1g36280.1 68414.m04509 adenylosuccinate lyase, putative /
adenylosuccinase, putative similar to SP|P25739
Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
{Escherichia coli}; contains Pfam profile PF00206: Lyase
Length = 527
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -3
Query: 631 EEALSFEVLFT-HRAVEALTVVVIVERLDPPVARLHGESASETFCCKELIPICFAVWQSV 455
+EALS +L T +++++++ P ++R HG+ AS T KE+ FAV SV
Sbjct: 200 QEALSSVILPTMDELIKSISLMAKSFAYVPMLSRTHGQPASPTTLGKEM--AIFAVRLSV 257
Query: 454 F*EERVVSE 428
E R +SE
Sbjct: 258 --ERRYLSE 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,049,475
Number of Sequences: 28952
Number of extensions: 383118
Number of successful extensions: 1185
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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