Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30991
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   36   0.016
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)               30   1.0  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               29   1.8  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 29   3.2  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   4.2  
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)             28   5.6  
SB_867| Best HMM Match : Leo1 (HMM E-Value=0)                          28   5.6  
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               27   9.7  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 28/102 (27%), Positives = 50/102 (49%)
 Frame = +3

Query: 6   LKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAP 185
           + +KV+   I + G  ++ E +H    S+F  +Y+LP     + V++ +T DG L + A 
Sbjct: 55  ISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEAL 113

Query: 186 ISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTVETLDVST 311
            +E     + TE  +    TG+     +  +K    TLDVS+
Sbjct: 114 KAE----PQETEVSLVGASTGSAGDIAKIDDKRFTVTLDVSS 151


>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
          Length = 857

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 278 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCL 457
           KD+ RNLG+  D   E+  S G++   G +  E T      + +    Q  P  ++SF L
Sbjct: 303 KDEDRNLGKNKDERHEEY-SKGNENMDGIKPFELTPEIEAIQSTTTDEQNKPNTEQSFLL 361

Query: 458 SD 463
           S+
Sbjct: 362 SE 363


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 105 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 257
           YS+    S       + SD YL+ TA +SE +D +    R V I  TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 239 RDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEER 379
           R WR+V   R C +  S    +  D GA  + +  + C TGT  E R
Sbjct: 343 RVWRTVPPQRVCLEVPSEKARKIPDDGALTVRTEATGC-TGTANEIR 388


>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 362 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 451
           TRG ER++HA +     RK +++ T+  SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 108  SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKT 284
            ++PVN+ A          G  +VT  ++  V +   T  V P+V   A   K EP  +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +3

Query: 6   LKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 182
           +  KV+   + VQG +   E +      +F  T++LP      +VT+ +++ G+L + A
Sbjct: 22  ISFKVENGVVKVQG-RHVNEGEFGFELKEFRRTFTLPEGIDPENVTSRISNHGHLHIEA 79


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 45  GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 134
           G+   +E+D DV+A      Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274


>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +3

Query: 69  DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 248
           D DV+A Q    YS PV    +  +   +  G L  T   +   +KT+N +    I+E  
Sbjct: 61  DFDVYAHQSETEYSGPVPDPNSRPSGTYSKIGTLNATKLWTSFGNKTQNVQTFSLILENS 120

Query: 249 APY 257
            PY
Sbjct: 121 KPY 123


>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
          Length = 617

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +3

Query: 69  DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 248
           D DV+A Q    YS PV       +   +  G L  T       +KT+N + +  I+E  
Sbjct: 137 DFDVYAHQSETQYSGPVPDPNNSPSGTCSKIGTLNATELSPSLGNKTQNVQTLSLILENS 196

Query: 249 APY 257
            PY
Sbjct: 197 KPY 199


>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
          Length = 591

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 302 RFYDSGAEDISSSG-SDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKR 445
           R Y S  +D    G  D  +   GEER  +A   + S+ +   +P+RKR
Sbjct: 517 RAYSSEEDDGEEEGLGDLESDNEGEERLMNAKEGKDSEEESIEEPSRKR 565


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +2

Query: 242  DWRSVQEGRACRK-----DDSRNLGRFYDSGAEDISSSGSDCSTGTRGE 373
            D R   +GR  R      D SR++GR  D   ED+SS  S     +R E
Sbjct: 1054 DGRGRDKGRQMRTRLPSIDSSRSMGRSSDEDHEDLSSEPSSSIENSRKE 1102


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 332 SSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRK 442
           S+SGSD S   R E   D   R+    R+R+  P R+
Sbjct: 839 SASGSDSSPHRRSESPRDRRRRSPEHRRRREASPPRR 875


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,151
Number of Sequences: 59808
Number of extensions: 232449
Number of successful extensions: 910
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)