Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30986
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10890.1 68417.m01772 expressed protein                             29   1.6  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   2.8  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   3.7  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   3.7  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    27   4.8  
At2g11620.1 68415.m01249 hypothetical protein                          27   4.8  
At3g45800.1 68416.m04957 hypothetical protein                          27   6.4  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    26   8.5  

>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 166 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 282
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 372 LCNHTPPGVQNLWFPGSCPP 313
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 203 HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 69
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 221 RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 331
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 164 RSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSSS 24
           RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 357 PPGVQNLWFPGSCPPSHCSNVGGS 286
           PPG  + WFP S P   C+N G S
Sbjct: 105 PPGANDHWFPYSDPA--CTNSGAS 126


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 357 PPGVQNLWFPGSCPPSHCSNVG 292
           PPG  + WFP S P   C+N+G
Sbjct: 295 PPGANDHWFPYSDPA--CTNLG 314


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 239 RRLDTALVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPG 355
           R LD A+  T    +SD PTL   L G+ P N     PG
Sbjct: 215 RALDVAVNGTKRRRTSDSPTLPNKLDGKNPSNILKKAPG 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,877,176
Number of Sequences: 28952
Number of extensions: 168419
Number of successful extensions: 458
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)