Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30984
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0428 - 3127098-3129254                                           31   1.2  
05_03_0353 - 12856385-12857705,12858007-12858959                       28   8.3  
03_05_0736 - 27254502-27255497                                         28   8.3  
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224...    28   8.3  
01_06_0592 + 30465956-30466210,30466401-30466529,30466631-304667...    28   8.3  

>02_01_0428 - 3127098-3129254
          Length = 718

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 426 ASKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGY 545
           A  ++ PTY++SK   P+   + Y+Y I+R + +VA  G+
Sbjct: 523 ARVLILPTYMSSKKDLPALKDWKYEYRILRAEVNVARNGF 562


>05_03_0353 - 12856385-12857705,12858007-12858959
          Length = 757

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 416 GCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 321
           GC+W   G    GQ   A S VS T    E+L
Sbjct: 172 GCEWSDPGFFLRGQEEEASSSVSTTTAMEEIL 203


>03_05_0736 - 27254502-27255497
          Length = 331

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 541 ATTTCTRPR--TRFSLKKPARSRTLAPKTKASRS 636
           ATTT + P+  T+F+L + ARS T  P +K+  S
Sbjct: 14  ATTTLSSPQLCTQFALDRVARSTTTIPLSKSKSS 47


>02_02_0453 +
           10420585-10421661,10422015-10422146,10422232-10422456,
           10422555-10422680,10422777-10422839,10423214-10423296,
           10424078-10424309,10424421-10424489,10424532-10424731,
           10424819-10424894,10425015-10425081,10425194-10425471,
           10425600-10425787,10426235-10426391,10426496-10426741
          Length = 1072

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 452 VCGCDHLAGNVCGCDWHGNGRLHDGQGNNAG 360
           VC C H  G++C CD    G+  D    + G
Sbjct: 8   VCSCPHYKGSLCFCDCGCFGQTPDSPRESRG 38


>01_06_0592 +
           30465956-30466210,30466401-30466529,30466631-30466760,
           30466861-30466981,30467111-30467192,30467334-30467384,
           30467836-30467929,30468046-30468173
          Length = 329

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 608 WHRKRRHQGQGILRIRWPRTVSPT 679
           WHR+RR  G+G+L +      SP+
Sbjct: 47  WHRRRRTSGRGVLTVSAVAAESPS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,677,199
Number of Sequences: 37544
Number of extensions: 309994
Number of successful extensions: 970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)