Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30983
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    27   2.2  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   2.2  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   3.9  
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    27   3.9  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   6.8  

>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 563 VHLTNACTPLFRQ 601
           VHL NAC+PLFR+
Sbjct: 140 VHLYNACSPLFRE 152


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 421 SRTDYPREHKWLI*VQQLHSRSRYKRPYRVPSLTHYLKNAQKKRLTSGSSD 573
           SR DYP   +++  ++++H     +    VPS+    +N+++K     SS+
Sbjct: 65  SRWDYPYPREYIEELKKIHGVHHVEENRDVPSILENYRNSKRKSHNFSSSN 115


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 353 PAIASFSEDEDIAPVMPLSKESGQV*INC 267
           P +A  +EDE IA V  ++K  G V  NC
Sbjct: 362 PMLAHKAEDEGIAAVEYIAKGQGHVNYNC 390


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 390 QPSNWNLNRF--IEDRLSTGTQVAHLS 464
           QP NW+   F  ++DR+  G+ ++HL+
Sbjct: 7   QPENWHEQDFRAVDDRVRGGSSISHLT 33


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -3

Query: 161 NLSSNKERISIYY--EESDSFNENSNRLVQLLLGDNRHIRVGSSKTSRK 21
           NL  NKE  SI    E      EN+ R++Q L        VGSS+   +
Sbjct: 156 NLLENKENQSILVTGESGAGKTENTKRIIQYLAAIASSTTVGSSQVEEQ 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,152,886
Number of Sequences: 5004
Number of extensions: 64660
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)