Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30982
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    28   6.5  
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    28   6.5  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical
           protein F52G3.5 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 265 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPT 143
           TTT   P T     KK  ++R+  PKT  + +  +T T APT
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPT 236


>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 335 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 240
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 335 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 240
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 335 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 240
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 335 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 240
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 271 KATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 140
           + TTT  +P T  S KK   + T  P  K S+   +T T +P V
Sbjct: 375 QVTTTTKKPSTTTSTKKLTTTTTTTP--KPSQKPTTTTTKSPVV 416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,333,569
Number of Sequences: 27780
Number of extensions: 177834
Number of successful extensions: 665
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)