Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30981
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...   115   7e-27
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    31   0.25 
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    29   1.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.4  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   3.1  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   3.1  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   4.1  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   5.5  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    26   7.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.2  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   9.6  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score =  115 bits (277), Expect = 7e-27
 Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 1/219 (0%)
 Frame = +1

Query: 67  LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 246
           LSD  VQ ++  M++FI+Q                F +EK ++V++Q   I         
Sbjct: 3   LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62

Query: 247 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 426
                  I  SN+LN++RL++L  ++  + ++     K+L  + +    Y++ +  LIVQ
Sbjct: 63  RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122

Query: 427 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSPDTCGGI 603
           A+  L EP   +  RQ D  +V++ + KA    K+K    D  L  +T++FL+    GG+
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGV 182

Query: 604 ELVAARGRIKISNTLESRLELIAQQLLPEIRNALLRTQP 720
            LV   G+I++ NTL +RLE++ ++ LPEIR  L    P
Sbjct: 183 VLVGLGGKIRVDNTLRARLEIVKEEALPEIRRLLFGENP 221


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 595 HRCRATKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 476
           H  R  +SS + RLS +H   S++C +      G P  PCR
Sbjct: 77  HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 532 KIKKDVVLKVDTENFLSPDTCGGIELVAA--RGRIKISNTLESRLELIAQQLLPEIRNAL 705
           K+ KD    +  E+FL  D    +    A  RG + +S      LEL +QQLL    NA 
Sbjct: 317 KLAKDY--DMSPEDFLMDDFTLSLTQYGAFYRGTLPLS---AQPLELPSQQLLRSQSNAA 371

Query: 706 LRTQPLTVNSPINSTGNTN 762
           LR+  L++N  + S  +TN
Sbjct: 372 LRSNSLSMNGSL-SPSSTN 389


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 475  TDKALVESLLGKAQTDYKNKIKKDVVLKVDTENF--LSPDTCGGIELVAARGRIKISNTL 648
            TD+   ++ + K + D  +  K+DV+ K+D       S    G +E    +G +K S   
Sbjct: 1861 TDQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQASSKKPGYVEKNKDKGHMKKSKKP 1920

Query: 649  ESRLELIA 672
            +S+L L A
Sbjct: 1921 KSKLALAA 1928


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 325 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 450
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
 Frame = +1

Query: 343  LDEARKRLAEVPKDTK-LYSELLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 495
            ++EA K      KD K L   +L T+ +     +   +E T+TI V        DK   E
Sbjct: 745  VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804

Query: 496  SLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTC 594
            + LGK   D  N  + DV+  V  E   + D C
Sbjct: 805  NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 732 IYG*GLRPKKGVTYLRQQLLGDQLQARLQ 646
           I G  L   KG+TY    LLGD+  ARL+
Sbjct: 166 IEGGQLEQVKGITYSLDALLGDEKLARLK 194


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 651 LQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLIL 526
           LQ V+ +  SP    L     VG+ +V+  DF    LLDL L
Sbjct: 223 LQHVSHISISPNARYLALYESVGKVRVISSDFSKE-LLDLRL 263


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 621 PGC-NQLDSTTGVGRQKVLGVDFQHNILLDLILVVCLGF 508
           PG  N LDS  G  R+K       H + + ++L++C G+
Sbjct: 22  PGTSNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLCSGY 60


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 528 LVVCLGFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQL*VQFGV 382
           L+V     EQG    ++   D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 625 RIKISNTLESRLELIAQQLLPEIRNALLRTQP---LTVNSPINSTGNT 759
           +IK  N  +  +E   QQL  EIRN LL+      + V +P+N   NT
Sbjct: 85  QIKQLNEEKLSIEARKQQLEIEIRNQLLQYAEKLRIVVKTPMNQPTNT 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,227
Number of Sequences: 5004
Number of extensions: 56382
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)