Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30979
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41990.1 68415.m05194 expressed protein                             31   0.51 
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   0.88 
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    29   3.6  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    29   3.6  
At2g36650.1 68415.m04495 expressed protein                             28   6.2  
At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to...    28   6.2  
At2g33350.1 68415.m04088 hypothetical protein                          27   8.2  

>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 236 APLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKF 93
           +PLL+HYS  L     +  FT   NG  TN + +   H + L+  + F
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGE-TNVVTVVQGHQIPLYGGVSF 240


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 279 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 181
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 41  SFYIFFG-YYGCKIHQFIKI*FFGTTLDCV 127
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 41  SFYIFFG-YYGCKIHQFIKI*FFGTTLDCV 127
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At2g36650.1 68415.m04495 expressed protein
          Length = 373

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +1

Query: 247 EAKRLIVKNKRFERSQVLAFVVEWIDENKELEWESTFSTSR--QHESFRHVTELFRHIKR 420
           E K  IVK    +   + A+V    +E +EL  +S+ STS     E +R + E +  +K+
Sbjct: 206 ETKNNIVKELEGKVKDMEAYVDVLQEEKEELFMKSSNSTSEMVSVEDYRRIVEEYEELKK 265

Query: 421 -YFSFVEHLHNFSHWHGVFFKYD 486
            Y + V+ + N   W     +++
Sbjct: 266 DYANGVKEVINL-RWSNACLRHE 287


>At1g04500.1 68414.m00441 zinc finger CONSTANS-related similar to
           Zinc finger protein constans-like 15 (SP:Q9FHH8)
           {Arabidopsis thaliana}
          Length = 386

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 604 IVFGSQEDFDNSVTGDI 654
           I+F SQ+DFDN +T  I
Sbjct: 85  IIFDSQDDFDNDITASI 101


>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 604 IVFGSQEDFDNSVTGDI 654
           I+F SQEDF+N +T  I
Sbjct: 127 IIFDSQEDFENDITASI 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,403,004
Number of Sequences: 28952
Number of extensions: 315084
Number of successful extensions: 836
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)