Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30977
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               30   1.7  
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)         29   2.3  
SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)                   29   4.0  
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)                      29   4.0  
SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  

>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 292 NIYPLGI*CFYERLFCNVVDIYLYYLLPWSMYRECERVRRMH 167
           N Y + I C+Y  + C V  +YL++ L   + +ECE     H
Sbjct: 158 NTYTILILCYYPAILCIVKPVYLFFGL--GVDKECESCYSFH 197


>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
          Length = 428

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -1

Query: 315 FFFVSQTKIYTL*GFNVFTKGY-FVTLLI--FIY-IIYYRGVCIESASECVGCTCAREHR 148
           FF  + T I T   ++V  +GY ++ L +   +Y ++YY G    S +E +       HR
Sbjct: 355 FFICAITMIVT---YSVLLRGYKYMELSLDKLVYNLVYYFGATKYSVTEIMKIVLCSIHR 411

Query: 147 RDTPPTSAPHTRTCTPR 97
           R+   +   H  +C PR
Sbjct: 412 RNVYVSLYIHLLSCAPR 428


>SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)
          Length = 555

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 453 WRPKIFKRSTTKHKNGLYRFFVENVTFYTLAVDDERKTVK 334
           + P   K  T KH  GL+   + ++T     + DER+ V+
Sbjct: 174 YEPAAMKAFTQKHSPGLFEMLLSSITREDSRLSDERQAVQ 213


>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
          Length = 488

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 193 ECERVRRMHVRARAPPRHAPHLR 125
           +CE V R H+  R+PP + P L+
Sbjct: 423 QCESVARKHMPRRSPPAYKPQLK 445


>SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 208 WSMYRECERVRRMHVRARAPPRHAP 134
           WSM+ EC  + R+ V +R PP  +P
Sbjct: 146 WSMFNECFPLIRVKVSSRDPPYMSP 170


>SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 208 WSMYRECERVRRMHVRARAPPRHAP 134
           WSM+ EC  + R+ V +R PP  +P
Sbjct: 12  WSMFNECFPLIRVKVSSRDPPYMSP 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,896,135
Number of Sequences: 59808
Number of extensions: 310886
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)