Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30977
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41624-2|AAF99943.2|  351|Caenorhabditis elegans C.elegans homeo...    29   2.7  
AF244368-1|AAF77181.1|  351|Caenorhabditis elegans LIM homeobox ...    29   2.7  
Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U41624-2|AAF99943.2|  351|Caenorhabditis elegans C.elegans homeobox
           protein 14 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 153 HRRDTPPTSAPHTRTCTPRTLHLTFNKAISLS*NI 49
           +R +TP T  P     TP  L   F+  +SLS N+
Sbjct: 298 YRNETPSTDPPPMHMTTPSVLTTNFSTPLSLSTNV 332


>AF244368-1|AAF77181.1|  351|Caenorhabditis elegans LIM homeobox
           protein CEH-14 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 153 HRRDTPPTSAPHTRTCTPRTLHLTFNKAISLS*NI 49
           +R +TP T  P     TP  L   F+  +SLS N+
Sbjct: 298 YRNETPSTDPPPMHMTTPSVLTTNFSTPLSLSTNV 332


>Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical
           protein F47G4.2 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 337 KILNMQFFFFCKPNKNIYPLGI 272
           K+LN  FF FCK   N+Y L I
Sbjct: 148 KLLNPDFFQFCKSFPNLYSLDI 169


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 195 ESASECV-GCTCAREHRRDTPPTSAPHTRTC 106
           ++ ++C+ GCTC   ++RD+      H+R C
Sbjct: 484 KAPAKCLPGCTCRPAYKRDSDSGQCVHSRQC 514


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 195 ESASECV-GCTCAREHRRDTPPTSAPHTRTC 106
           ++ ++C+ GCTC   ++RD+      H+R C
Sbjct: 484 KAPAKCLPGCTCRPAYKRDSDSGQCVHSRQC 514


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 319 IAYLVFYSFSLIINS*CIKSYV 384
           I  L+FY F+  INS C+K Y+
Sbjct: 34  ITELIFYFFAFYINSVCLKVYL 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,802,375
Number of Sequences: 27780
Number of extensions: 241226
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)