Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30976
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   1.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.5  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   2.7  
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo...    25   6.2  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   6.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.2  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 194 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 283
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +3

Query: 285 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SPVTGIA*TRRSFKTRVTARLSSFAL 461
           S  NS T  AT +S   L+  +  +  +A S P S V     T  S  T +T+ ++S   
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481

Query: 462 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGSF 587
            SAS  P  S+   S T+  STP T  N   +    +T  S+
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 32  MISTVLSAVECVLFQ*NVFTRERFSVCLVSTIS 130
           MIS  + A+  ++ +  VF  E F V L+ST++
Sbjct: 840 MISATIIAISSIVMEYKVFISEPFLVQLISTLN 872


>SPBC16E9.15 |||heat shock factor binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 75

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 194 GDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 316
           GDF  +  +FS   E     + ++EE M     E MN++S+
Sbjct: 31  GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSS 67


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 398 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 514
           +S+ SP +  EG   +LK R   +  TP+  +  T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 585 NSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSGV 475
           +S++ S  T  +S  SS    +S+  S+ +TTISSG+
Sbjct: 528 SSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGI 564


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 175  KYPHQAWRFFGYRY 216
            +YP  AW+FF  RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,109
Number of Sequences: 5004
Number of extensions: 41036
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)