Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30973
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    97   2e-21
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.18 
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   1.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.7  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 74/205 (36%), Positives = 105/205 (51%), Gaps = 6/205 (2%)
 Frame = -3

Query: 600 QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 436
           ++ G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCI
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59

Query: 435 LLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPK 259
           LLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS  +I +    + K
Sbjct: 60  LLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK 118

Query: 258 HFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPD 79
            F   YF             K+ +  FA    K     +R  DQK VD  ++ AI A P+
Sbjct: 119 -FTKAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPN 173

Query: 78  KKVLRGYLKAAFGLRSSQYPHRLRF 4
              ++ YL A+F L +   PH ++F
Sbjct: 174 ---MKEYLAASFALSNGDRPHLMKF 195


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 392 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 526
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = -1

Query: 263 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 126
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = -1

Query: 293  PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 114
            P F  +TSN  +TS  I S   R+      ++   +TS   K   T  +S+A      S 
Sbjct: 888  PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947

Query: 113  RL*SKPSEP 87
               +  +EP
Sbjct: 948  SSNTLSTEP 956


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 90   ARPDKKVLRGYLKAAFGLRSSQYPHRLR 7
            A PD++VLR  LKAA  L+    P   R
Sbjct: 1401 ANPDEEVLRAKLKAAERLQKPAIPRTRR 1428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,040
Number of Sequences: 5004
Number of extensions: 63962
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)