Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30973
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               86   3e-17
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.7  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         30   1.7  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   9.3  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
 Frame = -3

Query: 357 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDDYFXXXXXXXXXXXXXKEGDDI 181
           PF  N  PLRRIPQ YVI TST I + + KLP+H F D+ +             K  +D+
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESY-----FKGEPKKKKRSEDM 56

Query: 180 FATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 4
           F    E+  PSEQR  DQK VD+ ++  I A P+   ++ YL + F LR  Q+PH + F
Sbjct: 57  FEEAAEEKKPSEQRIADQKAVDDQILPKISAVPN---MKKYLSSLFSLRKGQFPHDMVF 112


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -1

Query: 263  QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPD 84
            + T ++ T++ +   S+     +R   S     R   H    KP  R++T   SKP+EPD
Sbjct: 966  RQTPLVDTTKAVGPLSSTSETRRRQSDSDSVLSRRLDH---TKPPLRKTTSNDSKPTEPD 1022

Query: 83   PTRRCSADTSKRPSDSA 33
             +RR     S   S +A
Sbjct: 1023 SSRRTYRAASMDASTTA 1039


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 163 EIRSI*AAQNRSEDSRRGCDQSHRSPTRQEGAPRIPQSGLRTPL 32
           E++     Q + +   +G ++ H     QEG  ++PQ G +TP+
Sbjct: 657 EVQGQEQGQGQDQSHVQGQEEGHSQDQGQEGTNQVPQQGEKTPI 700


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -2

Query: 466 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCFQFVPATPYS 320
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -2

Query: 574 NQNSTPQ---T*EVLLPHSGENPCFIWWPSIQQACTQDPTQP 458
           NQ++ PQ   T  VL+PH G  PC   +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 91  SPTRQEGAPRIPQSGLRTPLEPISPSAALL 2
           SPT + G P +P S   T   P+ P +++L
Sbjct: 299 SPTTENGTPDVPHSSFPTTGIPVIPQSSVL 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,213,280
Number of Sequences: 59808
Number of extensions: 513839
Number of successful extensions: 1712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)