Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30973
(749 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 132 2e-31
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 132 2e-31
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 130 1e-30
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi... 33 0.20
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 32 0.35
At3g10440.1 68416.m01252 hypothetical protein 31 0.82
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.9
At5g08320.1 68418.m00979 expressed protein predicted proteins, H... 29 4.4
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf... 28 5.8
At3g05050.1 68416.m00548 protein kinase family protein contains ... 28 5.8
At2g27270.1 68415.m03277 expressed protein 28 5.8
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 28 7.6
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 132 bits (320), Expect = 2e-31
Identities = 92/247 (37%), Positives = 127/247 (51%)
Frame = -3
Query: 744 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRT 565
K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 9 KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------D 55
Query: 564 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 385
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 56 APVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQL 113
Query: 384 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXX 205
SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKK 169
Query: 204 XXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQ 25
EG+ A K+EK + +K DQK VD A+IKAI A P+ L+ YL A F L+
Sbjct: 170 KKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSLKQGM 226
Query: 24 YPHRLRF 4
PH L F
Sbjct: 227 KPHELVF 233
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 132 bits (320), Expect = 2e-31
Identities = 92/247 (37%), Positives = 127/247 (51%)
Frame = -3
Query: 744 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRT 565
K RN DL GV ++S+S+M+HK+ + + V
Sbjct: 9 KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------D 55
Query: 564 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 385
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L
Sbjct: 56 APVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQL 113
Query: 384 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXX 205
SGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKK 169
Query: 204 XXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQ 25
EG+ A K+EK + +K DQK VD A+IKAI A P+ L+ YL A F L+
Sbjct: 170 KKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSLKQGM 226
Query: 24 YPHRLRF 4
PH L F
Sbjct: 227 KPHELVF 233
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 130 bits (314), Expect = 1e-30
Identities = 92/247 (37%), Positives = 125/247 (50%)
Frame = -3
Query: 744 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRT 565
K RN DL GV ++S+S+M+HK+ + V
Sbjct: 9 KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------D 55
Query: 564 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 385
P+++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV + L
Sbjct: 56 APVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQL 113
Query: 384 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXX 205
SGLLLVTGPF N PLRR+ Q YVIGTST+I + K F+D YF
Sbjct: 114 SSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVAEKKK 169
Query: 204 XXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQ 25
EG+ A K+EK +++K DQKTVD A+IK+I A P+ KV YL A F L
Sbjct: 170 KKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKV---YLGARFSLSQGM 226
Query: 24 YPHRLRF 4
PH L F
Sbjct: 227 KPHELVF 233
>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 530
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = -1
Query: 227 RSASNVQSNAKRVMTS---LPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADT 57
R+ N+ S + +T+ LP+K +T S++P + S + KP + R S+++
Sbjct: 41 RAKDNLSSKSSTTVTNPKILPRKSTDT----SSQPKKSDSQKPQQKPKPDENHPRKSSES 96
Query: 56 SKRPSDSARANIPIG 12
+++ SDSAR +I G
Sbjct: 97 ARKSSDSARKSISSG 111
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
thaliana}
Length = 1473
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -3
Query: 177 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRL 10
ATK K P+ RK ++TV + AIG P+KKV R + F +SS RL
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV-RKMRSSPFNKKSSSVMSRL 1407
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 31.1 bits (67), Expect = 0.82
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = -1
Query: 281 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS-----LPQKKRNTFHLSSAK-PIRRQ 120
S++S + S T +++ A ++ +A+ +T Q+ + L ++ P+RR+
Sbjct: 256 SSSSKTREASQTETLQKVVDAKEIKGDARFSLTKHSDWLKSQEPEPSESLYESRFPLRRR 315
Query: 119 STRL*SKPSEPDPTRRCSADTSKRPSDSARA 27
S RL S+ EP + S +T+KR + R+
Sbjct: 316 SARLKSQEPEPSESFHDSIETTKRRRSAIRS 346
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 561 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 472
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
sapiens and Caenorhabditis elegans
Length = 150
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 298 GADHIALRNTA*RARIESKRSSN*KQTAGQNSNKYNPLACMSTSEE 435
G D + +NT + +R S ++T ++S K NP+ C + S E
Sbjct: 85 GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTE 130
>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 417
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 106 DQSHRSPTRQEGAPRIPQSGLRTPLEPISPSAAL 5
D S S + Q+ PRI SG TP +P+SP + +
Sbjct: 78 DGSKNSSSDQQTLPRISISGKNTP-DPVSPDSVI 110
>At3g05050.1 68416.m00548 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 593
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -1
Query: 275 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 96
T ++TS ++ + SASN + + + QKK N F ++ AK + + R SKP
Sbjct: 40 TETTESTSAVV----VASASNGEE-VRNHEDVVDQKKENGFVVTEAKERKSKGERKRSKP 94
Query: 95 SEPDPTR 75
PDP R
Sbjct: 95 --PDPRR 99
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -3
Query: 534 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 355
PT++K A G SKH R + + + C+ GK ++ G+ + +LL+
Sbjct: 21 PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73
Query: 354 FAFNSCPLR-RIPQ 316
FAFN ++ R+P+
Sbjct: 74 FAFNYIAIQPRVPR 87
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 595 WR*EEWGNQNSTPQT*EV--LLPHSGENPCFIWWPS 494
W+ E Q ++PQ V L H G+ C +WWPS
Sbjct: 96 WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,362
Number of Sequences: 28952
Number of extensions: 360573
Number of successful extensions: 1012
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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