Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30972
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0428 - 3127098-3129254 31 0.57
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 0.99
03_05_0736 - 27254502-27255497 28 4.0
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 27 5.3
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147... 27 7.0
05_04_0345 + 20451497-20451740,20452078-20452159,20452837-204528... 27 7.0
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 27 9.2
11_01_0236 + 1811822-1812971,1814930-1814979,1815676-1816116,181... 27 9.2
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 27 9.2
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 27 9.2
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 27 9.2
01_06_0592 + 30465956-30466210,30466401-30466529,30466631-304667... 27 9.2
>02_01_0428 - 3127098-3129254
Length = 718
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 38 ASKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGY 157
A ++ PTY++SK P+ + Y+Y I+R + +VA G+
Sbjct: 523 ARVLILPTYMSSKKDLPALKDWKYEYRILRAEVNVARNGF 562
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 29.9 bits (64), Expect = 0.99
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 227 ENEGIKVKGFYEYVGPDGVTYRVDYTAD 310
E G +++G +VGPDG TYR + AD
Sbjct: 90 EFRGGRIEGQGVFVGPDGATYRGAWAAD 117
>03_05_0736 - 27254502-27255497
Length = 331
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 153 ATTTCTRPR--TRFSLKKPARSRTLAPKTKASRS 248
ATTT + P+ T+F+L + ARS T P +K+ S
Sbjct: 14 ATTTLSSPQLCTQFALDRVARSTTTIPLSKSKSS 47
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 89 WVGPPCWQRMWV*P 48
W CWQRMWV P
Sbjct: 14 WPTASCWQRMWVHP 27
>09_06_0243 -
21813223-21813456,21814266-21814367,21814501-21814701,
21815591-21815716,21815791-21816072,21816218-21816388,
21816838-21816999,21817404-21817467,21818136-21818503
Length = 569
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 164 LYETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGFVA 328
L + E + A +A + E + + G GPDG T+R E G VA
Sbjct: 513 LQKIEERTSARKAKQYEKSDEIRKELAAVGIALMDGPDGTTWRPSVPLSEQGVVA 567
>05_04_0345 +
20451497-20451740,20452078-20452159,20452837-20452882,
20453669-20454352
Length = 351
Score = 27.1 bits (57), Expect = 7.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 30 HTLPARWSHPHTLP 71
H LP +W+HP T+P
Sbjct: 145 HQLPQKWAHPITMP 158
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 77 VVPPSGAGYDYKYGIIRY-DNDVAPEGYHYL--YETENKIL 190
V+PPS G+D +YG + + D +A YE + ++L
Sbjct: 312 VLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVL 352
>11_01_0236 +
1811822-1812971,1814930-1814979,1815676-1816116,
1816199-1816309,1816934-1817074,1817153-1817323,
1817421-1817625,1817714-1817886,1817997-1818079,
1818487-1818626,1818806-1818891,1818957-1819142,
1819172-1819365,1820387-1820736,1821153-1821235
Length = 1187
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 77 VVPPSGAGYDYKYGIIRY-DNDVAPEGYHYL--YETENKIL 190
V+PPS G+D +YG + + D +A YE + ++L
Sbjct: 720 VLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVL 760
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 53 TPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKV 211
+P A++ PPSGAG DY D E + E + + G V
Sbjct: 76 SPPRAAARPSPPSGAGVDYDSTATIIDGKSVAEDIRFQIAEEVRQMKNAVGHV 128
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 26.6 bits (56), Expect = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 64 VCGCDHLAGNVCGCD 20
VC C H G++C CD
Sbjct: 8 VCSCPHYKGSLCFCD 22
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 140 VAPEGYHYLYETENKILAEEAGKVENV-GTENEG 238
VA G H++ E NK++ + G E + G E++G
Sbjct: 88 VAAGGPHHIEELANKVVKMDGGSAEKIGGGEDDG 121
>01_06_0592 +
30465956-30466210,30466401-30466529,30466631-30466760,
30466861-30466981,30467111-30467192,30467334-30467384,
30467836-30467929,30468046-30468173
Length = 329
Score = 26.6 bits (56), Expect = 9.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 220 WHRKRRHQGQGILRI 264
WHR+RR G+G+L +
Sbjct: 47 WHRRRRTSGRGVLTV 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,153,754
Number of Sequences: 37544
Number of extensions: 185896
Number of successful extensions: 568
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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