Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30972
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022) 31 0.33
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 29 1.3
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 29 1.8
SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 28 3.1
SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62) 28 3.1
SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2) 27 5.4
SB_57201| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 7.2
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 176 ENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGF 322
EN L + GK + + + I G+YEY GP + RV AD GF
Sbjct: 154 ENSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWADHLGF 201
>SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)
Length = 395
Score = 31.5 bits (68), Expect = 0.33
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 167 YETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGF 322
+ ++N L + GK + + + I G+YEY GP + RV AD GF
Sbjct: 315 FTSKNSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWADHLGF 365
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 147 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAP 275
PK T TRP+TR + R +T PKTK S+S+ T T P
Sbjct: 270 PK-TRPKTRPKTRPKTRPKTRPKT-RPKTK-SKSKSKTKTATP 309
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 41 SKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVENV 220
+ ++ P V +K P G DY Y + D +A YH L E +E++
Sbjct: 183 ANIIAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHL 240
Query: 221 G 223
G
Sbjct: 241 G 241
>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1205
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +2
Query: 119 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVD 298
I+RYD + P Y E++I E K +++ G+ GF+E +G D
Sbjct: 491 IVRYDRNKVPSLYQLFKFIESRIEFELRTKHKSIFGYALGVIFAGFFEGIGMFKPKLG-D 549
Query: 299 YTADENGFVA 328
+ENG VA
Sbjct: 550 SKLNENGHVA 559
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 67 NVCGCDHLAGNVCGCDWHGNGR 2
N GC+ GN GC++ G+ R
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSR 403
>SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)
Length = 546
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 159 TTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 281
T T R R+ + P RS L P+ +ASRSRD APT+
Sbjct: 262 TELTERRKRYFVS-PLRSSCLWPRGRASRSRD--GACAPTM 299
>SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 174 PRTRFSLKKPARSRTLAPKTKASRSRD 254
P+T+ KP +R + KTK SR++D
Sbjct: 25 PKTKTKTSKPQAARQASRKTKTSRTQD 51
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 162 TCTRPRTRFSLKKPARSRTLAPKTKASRSRDS 257
TC R + SL P+ S + +P A+R RDS
Sbjct: 44 TCPHCRAKASLPSPSPSPSPSPSQGATRERDS 75
>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
Length = 344
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 174 PRTRFSLKKPARSRTLAPKTKASRSRDSTNTLA 272
P+T+ + KPAR R +PK K S+ +D +A
Sbjct: 289 PKTKST--KPARPRQASPKAKTSKPQDQDKQVA 319
>SB_57201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 216 TLAPKTKASRSRDSTNTL 269
T+APKTK SR+ +TNT+
Sbjct: 11 TMAPKTKCSRATMATNTV 28
>SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 336
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 170 ETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGFV 325
E K + ++GK ++ T+ + ++ K Y +G++Y A ENGF+
Sbjct: 41 EFRGKHQSSKSGKFFDLFTDEKALQRKYTYSADVCEGLSYAAKRFASENGFI 92
>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 147 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRS 248
P T+T PR+R + + +RSRT+ P T ++ S
Sbjct: 178 PSRTST---PRSRLTPRSRSRSRTITPSTPSTTS 208
>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +3
Query: 6 PFPCQSHPHTLPARWSHPHTLPARW 80
P P HP A W HP A W
Sbjct: 402 PRPICGHPSKTHANWCHPTKTQANW 426
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,249,102
Number of Sequences: 59808
Number of extensions: 203295
Number of successful extensions: 737
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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