Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30970
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 49 9e-07
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.12
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 30 0.47
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 28 1.4
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 28 1.9
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 28 1.9
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 27 3.3
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 26 5.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 7.6
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 26 7.6
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 26 7.6
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 48.8 bits (111), Expect = 9e-07
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 3/167 (1%)
Frame = +2
Query: 272 YKEFKETVSKLNTSIIPGELIFKLYDTHGLQEELINRIAELNNMTTDKEGFQKLLSKHKH 451
++++ K + + G +++LY+T+G +L + +AE + D+ GF+ ++ K
Sbjct: 399 FEQYAAAAKKTPSKTLQGNDVWRLYETYGFPVDLTHLMAEEAGIKIDEPGFEAAQARSKE 458
Query: 452 RHKTAFKEQALNKTILFND--AIDRLIK-NGISRTNDNFKYNYEITDSKLELGTLTTKLC 622
K A K + +L D A+ L K + I T+D FK+N +L + +
Sbjct: 459 ISKQASKGGSSGDDLLVLDVHALGALSKMDDIPETDDVFKHNSV---------SLKSVIK 509
Query: 623 AILNEDCQWIDVLDTIENRPYYLVTEDTNFYCEEGGQISDSGVARID 763
I ++ L+ + TNFY E+GGQ D+G ID
Sbjct: 510 GIYHKGGFQKSTEGFNSGEQLGLLLDRTNFYAEQGGQEYDTGHIVID 556
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 31.9 bits (69), Expect = 0.12
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -1
Query: 833 ENSLWGRQNLEF*NHYRLKMI-NVRRFLQHQSLISDHPPRNRNSCLLLPNNKVYFRLYLK 657
E+ L +NL + L ++ N R L H+ L+S+HP ++N+ L N+K Y + K
Sbjct: 217 ESKLASLRNLNINDRPPLPVLKNSERNLLHRQLLSNHPFFSQNNVSLSTNSKNYSTDFTK 276
Query: 656 RQSIDS 639
QS S
Sbjct: 277 IQSDSS 282
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 362 QEELINRIAELNNMTTDKEGFQKLLSKHKHRHKTAFKEQA-LNKTILFNDAIDRLIKNGI 538
+ EL++ I+ L T D+E +LS+++ +K A K + + + +++ +
Sbjct: 1108 KSELVSNISVLKKKTEDREVDINVLSEYRRCNKEAEKRDSDYQSELQKRTDLKKVVTDLQ 1167
Query: 539 SRTNDNFKYNYEITDSKLE 595
S+ D F Y + I KL+
Sbjct: 1168 SQRLDEFMYGFGIISMKLK 1186
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 521 LIKNGISRTNDNFKYNYEITDSKLELGTLTTKLCAILNEDCQWIDVLDTIENRPY 685
LI++G+S +++Y Y T + T K+C IL+ D + +D I + PY
Sbjct: 148 LIESGLSIGMGSYRYQYMFTKLSVFEQTQFDKVC-ILDSDLLVLKNMDDIFDTPY 201
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 27.9 bits (59), Expect = 1.9
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Frame = +2
Query: 26 CSDVFNNPHLLSNLYDEVAATLSSTYPELVSNKSSAKL------IIEHEAQAYAKMRAGL 187
C D+ + L+ NLYDE + S + + N KL IE+ A K A L
Sbjct: 169 CCDIVHREFLMGNLYDEEDISSFSYHMSFLQNYPIEKLNYLLQSSIEYLASEVIKFSAEL 228
Query: 188 AKKWKDLVTRYP------EVESLNDVETPGFALG-----YKEFKETVSKLNTSIIPGELI 334
+ + ++ R V +D++T AL E + TVS +++SI E I
Sbjct: 229 RQIIEGILNRIQLRIGILRVYERSDIKTTIDALHLIKNLVPEIQNTVSVVDSSI--KESI 286
Query: 335 FKLYDTHGLQEELINRIAELNNM--TTDKEGFQKLL 436
K Y +Q +L+ A + N+ T + +Q++L
Sbjct: 287 LKQYWDFRVQAQLV-ATAPVRNIPPTGIEHSYQRIL 321
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 1.9
Identities = 22/105 (20%), Positives = 41/105 (39%)
Frame = +2
Query: 8 HEAFKICSDVFNNPHLLSNLYDEVAATLSSTYPELVSNKSSAKLIIEHEAQAYAKMRAGL 187
+ A K+ S+ + N Y+ V+ ++ L N E + MR
Sbjct: 241 NHAAKLKSNFDRAKWYMGNFYNPVSTAINRVVYSLPRNSKDVYYTDEVGNITTSHMRVEP 300
Query: 188 AKKWKDLVTRYPEVESLNDVETPGFALGYKEFKETVSKLNTSIIP 322
+ W +L RYP N + + + Y+EF+ + ++ IP
Sbjct: 301 HQTWIELNPRYPVFGGWNYLFQLDWKMPYEEFRSSKNRREYLDIP 345
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 173 MRAGLAKKWKDLVTRYPEVESLNDVETPGFALGYKEFKETVSKLNTSI 316
+ AG+ + W+D YPE++ L E + G + + VS ++ +
Sbjct: 7 IEAGIYEPWRDKYMNYPELKHLLKTEEEAPSWGENDESKFVSVMDAQL 54
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +2
Query: 200 KDLVTRYPEVESLNDVETPGFALGYKEFKETVSKLNTSIIPGELIFKLYDTHGLQEELIN 379
++L +++ L D E YKE + LN S+ P E+ K+ EE +
Sbjct: 87 EELAEMEKQIQELKD-EVSVVKTLYKEKCIELQALNNSLSPAEIREKIQSIDKEIEETSS 145
Query: 380 RIAELNNMTT---DKEGFQK 430
++ L N T KE QK
Sbjct: 146 KLESLRNGTVKQISKEAMQK 165
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 206 LVTRYPEVESLNDVETPGFALGYK-EFKETVSKLNTSIIPGELIFKLY---DTHGLQEEL 373
LVT + S ++ F GY + E + KL+ ++ K+Y TH ++L
Sbjct: 168 LVTAEYTMPSTSEQSEDLFNNGYSSKVSELLRKLSPDNEKPPIVQKIYFTSRTHSQLQQL 227
Query: 374 INRIAELNNMT 406
+ I +LNN T
Sbjct: 228 VQEIKKLNNQT 238
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 703 HEFLLRGGWSDIRLW 747
H FL G WS+I+ W
Sbjct: 252 HNFLNEGAWSEIKAW 266
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 41 NNPHLLSNLYDEVAATLSSTYPELVSNKSSAKLIIEHEAQ 160
+N LLS + ++A L T PE SNKS A +E A+
Sbjct: 236 SNNTLLSEAHYKLALALEFTNPEDPSNKSRACEHVEKAAE 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,763
Number of Sequences: 5004
Number of extensions: 64463
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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